Evidence map›Paper›PMID 33041697›Full record

ArticleLimnology and oceanography, methods2020

Assessment of holographic microscopy for quantifying marine particle size and concentration.

Noah L Walcutt, Benjamin Knörlein, Ivona Cetinić, Zrinka Ljubesic, Suncica Bosak, Tom Sgouros, Amanda L Montalbano, Aimee Neeley, Susanne Menden-Deuer, Melissa M Omand

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Article in Limnology and oceanography, methods, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Noah L WalcuttUniversity of Rhode Island, Graduate School of Oceanography Narragansett Rhode Island USA.ORCID https://orcid.org/0000-0001-7301-9894
Benjamin KnörleinBrown University, Center for Computation and Visualization Providence Rhode Island USA.
Ivona CetinićNASA Goddard Space Flight Center Ocean Ecology Laboratory Greenbelt Maryland USA.ORCID https://orcid.org/0000-0002-1363-3136
Zrinka LjubesicFaculty of Science, Department of Biology University of Zagreb Zagreb Croatia.
Suncica BosakFaculty of Science, Department of Biology University of Zagreb Zagreb Croatia.
Tom SgourosDepartment of Computer Science Brown University Providence Rhode Island USA.
Amanda L MontalbanoUniversity of Rhode Island, Graduate School of Oceanography Narragansett Rhode Island USA.
Aimee NeeleyNASA Goddard Space Flight Center Ocean Ecology Laboratory Greenbelt Maryland USA.ORCID https://orcid.org/0000-0001-5701-0953
Susanne Menden-DeuerUniversity of Rhode Island, Graduate School of Oceanography Narragansett Rhode Island USA.ORCID https://orcid.org/0000-0002-8434-4251
Melissa M OmandUniversity of Rhode Island, Graduate School of Oceanography Narragansett Rhode Island USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Holographic microscopy has emerged as a tool for in situ imaging of microscopic organisms and other particles in the marine environment: appealing because of the relatively larger sampling volume and simpler optical configuration compared to other imaging systems. However, its quantitative capabilities have so far remained uncertain, in part because hologram reconstruction and image recognition have required manual operation. Here, we assess the quantitative skill of our automated hologram processing pipeline (CCV Pipeline), to evaluate the size and concentration measurements of environmental and cultured assemblages of marine plankton particles, and microspheres. Over 1 million particles, ranging from 10 to 200

Identifiers

PMID33041697
PMCPMC7540046

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.