Evidence map›Paper›PMID 33039802›Full record

ArticleDNA repair2020

Treatment of human cells with 5-aza-dC induces formation of PARP1-DNA covalent adducts at genomic regions targeted by DNMT1.

Kostantin Kiianitsa, Yinbo Zhang, Nancy Maizels

Open access · greenAbstract read
In one paragraph

Article in DNA repair, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
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  6. Topoisomerase Assays.Current protocols · 2021
    Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Kostantin KiianitsaDepartment of Immunology, University of Washington, Seattle, WA, 98195, USA.
Yinbo ZhangDepartment of Immunology, University of Washington, Seattle, WA, 98195, USA.
Nancy MaizelsDepartment of Immunology, University of Washington, Seattle, WA, 98195, USA; Department of Biochemistry, University of Washington, Seattle, WA, 98195, USA. Electronic address: maizels@uw.edu.
University of Washington · US

Funding

Tumor mutation signaturesP01CA077852 · NCI · UNIVERSITY OF WASHINGTON · PI LOEB, LAWRENCE A · 1999 to 2019
$26.0M
Genomic Instability at DNA NicksR01CA183967 · NCI · UNIVERSITY OF WASHINGTON · PI MAIZELS, NANCY · 2014 to 2018
$1.6M
Novel Targets of Chemotherapeutic Drugs that Trap Protein on DNAR21CA194876 · NCI · UNIVERSITY OF WASHINGTON · PI MAIZELS, NANCY, ONG, SHAO-EN · 2015 to 2016
$370k
NCI NIH HHS P01 CA077852NCI NIH HHS R01 CA183967NCI NIH HHS R21 CA194876
6 · The paper itself

Abstract

The nucleoside analog 5-aza-2'-deoxycytidine (5-aza-dC) is used to treat some hematopoietic malignancies. The mechanism of cell killing depends upon DNMT1, but is otherwise not clearly defined. Here we show that PARP1 forms covalent DNA adducts in human lymphoblast or fibroblasts treated with 5-aza-dC. Some adducts recovered from 5-aza-dC-treated cells have undergone cleavage by apoptotic caspases 3/7. Mapping of PARP1-DNA adducts, by a new method, "Adduct-Seq", demonstrates adduct enrichment at CpG-dense genomic locations that are targets of maintenance methylation by DNMT1. Covalent protein-DNA adducts can arrest replication and induce apoptosis, and these results raise the possibility that induction of PARP1-DNA adducts may contribute to cell killing in response to treatment with 5-aza-dC.

Indexed as

CpG IslandsAntimetabolites, AntineoplasticAzacitidineCells, CulturedDNADNA AdductsDNA (Cytosine-5-)-Methyltransferase 1DNA MethylationHematologic NeoplasmsHumansK562 CellsPoly (ADP-Ribose) Polymerase-1Antimetabolites, AntineoplasticAzacitidineDNADNA AdductsDNA (Cytosine-5-)-Methyltransferase 1DNMT1 protein, humanPARP1 protein, humanPoly (ADP-Ribose) Polymerase-15-methylcytosineCG islanddecitabineDNA methylationDNA-protein crosslinkRADAR enrichment

Identifiers

PMID33039802
PMCPMC7669653
OpenAlexW3091214896

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.