Evidence map›Paper›PMID 33037064›Full record

ArticleG3 (Bethesda, Md.)2020

A Mutation in the

Francheska López-Rivera, Olivia K Foster Rhoades, Ben J Vincent, Edward C G Pym, Meghan D J Bragdon, Javier Estrada, Angela H DePace, Zeba Wunderlich

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Unified bursting strategies in ectopic and endogenousbioRxiv : the preprint server for biology · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. A synthetic synthesis to explore animal evolution and development.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Francheska López-RiveraDepartment of Systems Biology, Harvard Medical School, Boston, MA 02115.ORCID 0000-0002-5160-6120
Olivia K Foster RhoadesDepartment of Systems Biology, Harvard Medical School, Boston, MA 02115.ORCID 0000-0001-7782-7995
Ben J VincentDepartment of Systems Biology, Harvard Medical School, Boston, MA 02115.ORCID 0000-0003-4598-7016
Edward C G PymDepartment of Systems Biology, Harvard Medical School, Boston, MA 02115.
Meghan D J BragdonDepartment of Systems Biology, Harvard Medical School, Boston, MA 02115.ORCID 0000-0003-4301-5264
Javier EstradaDepartment of Systems Biology, Harvard Medical School, Boston, MA 02115.ORCID 0000-0003-3646-204X
Angela H DePaceDepartment of Systems Biology, Harvard Medical School, Boston, MA 02115.ORCID 0000-0001-5723-0438
Zeba WunderlichDepartment of Systems Biology, Harvard Medical School, Boston, MA 02115 zeba@uci.edu.ORCID 0000-0003-4491-5715

Funding

Information Integration and Energy Expenditure in Eukaryotic Gene RegulationR01GM122928 · NIGMS · HARVARD MEDICAL SCHOOL · PI DEPACE, ANGELA H, GUNAWARDENA, JEREMY · 2017 to 2024
$3.7M
Mechanisms of shadow enhancer robustness during developmentR01HD095246 · NICHD · UNIVERSITY OF CALIFORNIA-IRVINE · PI Zeba B Wunderlich · 2018 to 2026
$2.7M
Diversity in Biomedical Sciences Via Personalized Research and Education Programs for Post-BaccalaureatesR25GM109436 · NIGMS · HARVARD UNIVERSITY · PI D'SOUZA, VICTORIA MANUEL, VELEZ-RUIZ, GISSELLE A · 2016 to 2024
$2.5M
Multi-scale modeling of genetic variation in a developmental networkU01GM103804 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI DEPACE, ANGELA H, MARJORAM, PAUL · 2013 to 2016
$2.0M
Dissecting expression divergence in developmental networks across DrosophilidsR00HD073191 · NICHD · UNIVERSITY OF CALIFORNIA-IRVINE · PI WUNDERLICH, ZEBA B · 2015 to 2017
$745k
Programmable metafluorophores for quantitative multiplex in situ imaging of mRNAR21HD072481 · NICHD · HARVARD MEDICAL SCHOOL · PI YIN, PENG · 2012 to 2013
$452k
Dissecting expression divergence in developmental networks across DrosophilidsK99HD073191 · NICHD · HARVARD MEDICAL SCHOOL · PI WUNDERLICH, ZEBA B · 2012 to 2013
$258k
NICHD NIH HHS K99 HD073191NICHD NIH HHS R00 HD073191NICHD NIH HHS R01 HD095246NICHD NIH HHS R21 HD072481NIGMS NIH HHS R01 GM122928NIGMS NIH HHS R25 GM109436NIGMS NIH HHS U01 GM103804
6 · The paper itself

Abstract

Enhancers are DNA sequences composed of transcription factor binding sites that drive complex patterns of gene expression in space and time. Until recently, studying enhancers in their genomic context was technically challenging. Therefore, minimal enhancers, the shortest pieces of DNA that can drive an expression pattern that resembles a gene's endogenous pattern, are often used to study features of enhancer function. However, evidence suggests that some enhancers require sequences outside the minimal enhancer to maintain function under environmental perturbations. We hypothesized that these additional sequences also prevent misexpression caused by a transcription factor binding site mutation within a minimal enhancer. Using the

Indexed as

Drosophila melanogasterDrosophila ProteinsAnimalsEnhancer Elements, GeneticGene Expression Regulation, DevelopmentalHomeodomain ProteinsMutationTranscription FactorsDrosophila Proteinseve protein, DrosophilaHomeodomain ProteinsTranscription FactorsDrosophila melanogasterenhancereven-skippedtranscription factor binding site

Identifiers

PMID33037064
PMCPMC7718739

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.