Evidence map›Paper›PMID 33037017›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2021

Comparative Genomics Reveals Distinct Immune-oncologic Pathways in African American Men with Prostate Cancer.

Shivanshu Awasthi, Anders Berglund, Julieta Abraham-Miranda, Robert J Rounbehler, Kevin Kensler, Amparo Serna, Adriana Vidal, Sungyong You, Michael R Freeman, Elai Davicioni and 15 more

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT05697198 (PRospective REgistry of Advanced Stage CancER), which is not on this map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
5.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT05697198 completednot on this map

PRospective REgistry of Advanced Stage CancER (PREFER) Patients to Assess Prevalence of Actionable Biomarkers and Driver Mutations Using the OmniSeq Test and Creation of a Biobank from Community Cancer Clinics in the United States to Address Disparities in Precision Medicine

Typeobservational_patient_registrySponsorLabcorp Corporation of America Holdings, IncRan2021 to 2024Enrolled1,429ConditionsLung Cancer, Ovarian Cancer, Uterine Cancer, Colorectal CancerArmsOmniSeq Test
3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 88 citations in OpenAlex.

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1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 11 institutions in 2 countries.

Shivanshu AwasthiDepartment of Cancer Epidemiology, H Lee Moffitt Cancer Center & Research Institutes, Tampa, Florida.ORCID 0000-0003-4175-3212
Anders BerglundDepartment of Biostatistics and Bioinformatics, H Lee Moffitt Cancer Center & Research Institutes, Tampa, Florida.ORCID 0000-0002-0393-3530
Julieta Abraham-MirandaDepartment of Cancer Epidemiology, H Lee Moffitt Cancer Center & Research Institutes, Tampa, Florida.ORCID 0000-0001-6982-564X
Robert J RounbehlerDepartment of Tumor Biology, H Lee Moffitt Cancer Center & Research Institutes, Tampa, Florida.
Kevin KenslerDana-Farber Cancer Institute and Harvard TH Chan School of Public Health, Boston, Massachusetts.ORCID 0000-0001-7515-7270
Amparo SernaDepartment of Cancer Epidemiology, H Lee Moffitt Cancer Center & Research Institutes, Tampa, Florida.
Adriana VidalCedar-Sinai Medical Center, Los Angeles, California.
Sungyong YouCedar-Sinai Medical Center, Los Angeles, California.
Michael R FreemanCedar-Sinai Medical Center, Los Angeles, California.
Elai DavicioniDecipher Bioscience, Inc, Vancouver, British Columbia, Canada.
Yang LiuDecipher Bioscience, Inc, Vancouver, British Columbia, Canada.
R Jeffrey KarnesDepartment of Urology, Mayo Clinic, Rochester, Minnesota.
Eric A KleinGlickman Urological and Kidney Institute, Cleveland Clinic, Cleveland, Ohio.
Robert B DenThomas Jefferson University, Philadelphia, Pennsylvania.ORCID 0000-0002-8653-1763
Bruce J TrockDepartment of Epidemiology, Johns Hopkins School of Medicine, Baltimore, Maryland.ORCID 0000-0003-3529-9295
Joshua D CampbellDepartment of Computational Biomedicine, Boston University, Boston, Massachusetts.ORCID 0000-0003-0780-8662
David J EinsteinBeth Israel Deaconess Medical Center, Dana-Farber Cancer Institute, Boston, Massachusetts.ORCID 0000-0001-9163-3281
Raavi GuptaDepartment of Pathology, SUNY Downstate Health Sciences University, Brooklyn, New York.
Steven BalkBeth Israel Deaconess Medical Center, Dana-Farber Cancer Institute, Boston, Massachusetts.ORCID 0000-0002-4546-7371
Priti LalDepartment of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, Pennsylvania.
Jong Y ParkDepartment of Cancer Epidemiology, H Lee Moffitt Cancer Center & Research Institutes, Tampa, Florida.ORCID 0000-0002-6384-6447
John L ClevelandDepartment of Tumor Biology, H Lee Moffitt Cancer Center & Research Institutes, Tampa, Florida.
Timothy R RebbeckDana-Farber Cancer Institute and Harvard TH Chan School of Public Health, Boston, Massachusetts.
Stephen J Freedland *Cedar-Sinai Medical Center, Los Angeles, California.
Kosj Yamoah *Department of Cancer Epidemiology, H Lee Moffitt Cancer Center & Research Institutes, Tampa, Florida. kosj.yamoah@moffitt.org.ORCID 0000-0001-9055-3538
Moffitt Cancer Center · USCedars-Sinai Medical Center · USDana-Farber Cancer Institute · USDecipher Biosciences (Canada) · CABoston University · USCleveland Clinic · USJohns Hopkins University · USMayo Clinic · USSUNY Downstate Health Sciences University · USThomas Jefferson University · USUniversity of Pennsylvania · US

Funding

TRANSLATIONAL RESEARCHP30CA076292 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI John L. Cleveland · 1998 to 2026
$93.5M
UCLA SPORE IN PROSTATE CANCERP50CA092131 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI REITER, ROBERT E · 2002 to 2023
$42.6M
Precision Interception of Aggressive Prostate Cancer in African American MenP20CA233255 · NCI · DANA-FARBER CANCER INST · PI REBBECK, TIMOTHY R · 2018 to 2020
$3.2M
NCI NIH HHS P20 CA233255NCI NIH HHS P30 CA076292NCI NIH HHS P50 CA092131
6 · The paper itself

Abstract

purposeThe role of immune-oncologic mechanisms of racial disparities in prostate cancer remains understudied. Limited research exists to evaluate the molecular underpinnings of immune differences in African American men (AAM) and European American men (EAM) prostate tumor microenvironment (TME). EXPERIMENTAL

designA total of 1,173 radiation-naïve radical prostatectomy samples with whole transcriptome data from the Decipher GRID registry were used. Transcriptomic expressions of 1,260 immune-specific genes were selected to assess immune-oncologic differences between AAM and EAM prostate tumors. Race-specific differential expression of genes was assessed using a rank test, and intergene correlational matrix and gene set enrichment was used for pathway analysis.

resultsAAM prostate tumors have significant enrichment of major immune-oncologic pathways, including proinflammatory cytokines, IFNα, IFNγ, TNFα signaling, ILs, and epithelial-mesenchymal transition. AAM TME has higher total immune content score (ICS

conclusionsProstate tumors of AAM manifest a unique immune repertoire and have significant enrichment of proinflammatory immune pathways that are associated with poorer outcomes. Observed immune-oncologic differences can aid in a genomically adaptive approach to treating prostate cancer in AAM.

Indexed as

AgedBlack or African AmericanDatasets as TopicEpithelial-Mesenchymal TransitionFollow-Up StudiesGene Expression Regulation, NeoplasticGenomicsHealth Status DisparitiesHumansMaleMiddle AgedNeoplasm Recurrence, LocalProstateProstatectomyProstatic NeoplasmsRisk Assessment

Identifiers

PMID33037017
PMCPMC8042600
OpenAlexW3092635944

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.