Evidence map›Paper›PMID 33035657›Full record

ArticleFungal genetics and biology : FG & B2020

In the fungus where it happens: History and future propelling Aspergillus nidulans as the archetype of natural products research.

Lindsay K Caesar, Neil L Kelleher, Nancy P Keller

Open access · greenAbstract read
In one paragraph

Article in Fungal genetics and biology : FG & B, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
7.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 63 citations in OpenAlex.

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  12. A Timeline of Biosynthetic Gene Cluster Discovery inJournal of fungi (Basel, Switzerland) · 2024
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  13. Terpenoid balance inScience advances · 2024
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  16. Terpenoid balance inbioRxiv : the preprint server for biology · 2023
    Article
  17. Article
  18. Article
  19. Production of L-Malic Acid by Metabolically EngineeredJournal of fungi (Basel, Switzerland) · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Lindsay K CaesarDepartment of Chemistry, Northwestern University, Evanston, IL, United States.
Neil L KelleherDepartment of Chemistry, Northwestern University, Evanston, IL, United States; Department of Molecular Biosciences, Northwestern University, Evanston, IL, United States; Proteomics Center of Excellence, Northwestern University, Evanston, IL, United States.
Nancy P KellerDepartment of Medical Microbiology and Immunology, University of Wisconsin- Madison, Madison, WI, United States; Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, United States. Electronic address: npkeller@wisc.edu.
Northwestern University · USUniversity of Wisconsin–Madison · US

Funding

Accessing the Silent Majority: Induction of Gene Expression in Fungal Artificial Chromosomes for Natural Product DiscoveryF32GM134679 · NIGMS · NORTHWESTERN UNIVERSITY · PI CAESAR, LINDSAY KATE · 2019 to 2022
$195k
NIGMS NIH HHS F32 GM134679
6 · The paper itself

Abstract

In 1990 the first fungal secondary metabolite biosynthetic gene was cloned in Aspergillus nidulans. Thirty years later, >30 biosynthetic gene clusters (BGCs) have been linked to specific natural products in this one fungal species. While impressive, over half of the BGCs in A. nidulans remain uncharacterized and their compounds structurally and functionally unknown. Here, we provide a comprehensive review of past advances that have enabled A. nidulans to rise to its current status as a natural product powerhouse focusing on the discovery and annotation of secondary metabolite clusters. From genome sequencing, heterologous expression, and metabolomics to CRISPR and epigenetic manipulations, we present a guided tour through the evolution of technologies developed and utilized in the last 30 years. These insights provide perspective to future efforts to fully unlock the biosynthetic potential of A. nidulans and, by extension, the potential of other filamentous fungi.

Indexed as

Biological ProductsMetabolomicsAspergillus nidulansGene Expression Regulation, FungalGenes, FungalSecondary MetabolismBiological ProductsAspergillus nidulansBioinformaticsBiosynthesisGenomicsHistorical perspectiveMolecular biologyNatural products

Identifiers

PMID33035657
PMCPMC7726033
OpenAlexW3091809224

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.