Evidence map›Paper›PMID 33035269›Full record

ArticlePLoS pathogens2020

Genome-wide transposon mutagenesis of paramyxoviruses reveals constraints on genomic plasticity.

Satoshi Ikegame, Shannon M Beaty, Christian Stevens, Taylor Won, Arnold Park, David Sachs, Patrick Hong, Benhur Lee, Patricia A Thibault

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Satoshi IkegameDepartment of Microbiology at the Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.ORCID 0000-0002-8183-3527
Shannon M BeatyDepartment of Microbiology at the Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.
Christian StevensDepartment of Microbiology at the Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.
Taylor WonDepartment of Microbiology at the Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.ORCID 0000-0002-4821-0854
Arnold ParkDepartment of Microbiology at the Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.ORCID 0000-0001-8916-2230
David SachsDepartment of Genetics and Genomic Sciences at the Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.
Patrick HongDepartment of Microbiology at the Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.ORCID 0000-0002-3701-1497
Benhur LeeDepartment of Microbiology at the Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.ORCID 0000-0003-0760-1709
Patricia A ThibaultDepartment of Microbiology at the Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.ORCID 0000-0002-7313-0848
Icahn School of Medicine at Mount Sinai · US

Funding

TRAINING PROGRAM: MECHANISMS OF VIRUS-HOST INTERACTIONST32AI007647 · NIAID · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI Domenico Tortorella · 2000 to 2026
$11.5M
CIHRNIAID NIH HHS T32 AI007647
6 · The paper itself

Abstract

The antigenic and genomic stability of paramyxoviruses remains a mystery. Here, we evaluate the genetic plasticity of Sendai virus (SeV) and mumps virus (MuV), sialic acid-using paramyxoviruses that infect mammals from two Paramyxoviridae subfamilies (Orthoparamyxovirinae and Rubulavirinae). We performed saturating whole-genome transposon insertional mutagenesis, and identified important commonalities: disordered regions in the N and P genes near the 3' genomic end were more tolerant to insertional disruptions; but the envelope glycoproteins were not, highlighting structural constraints that contribute to the restricted antigenic drift in paramyxoviruses. Nonetheless, when we applied our strategy to a fusion-defective Newcastle disease virus (Avulavirinae subfamily), we could select for F-revertants and other insertants in the 5' end of the genome. Our genome-wide interrogation of representative paramyxovirus genomes from all three Paramyxoviridae subfamilies provides a family-wide context in which to explore specific variations within and among paramyxovirus genera and species.

Indexed as

Genome, ViralMutagenesis, InsertionalMutationDNA Transposable ElementsHumansParamyxoviridaeParamyxoviridae InfectionsViral Fusion ProteinsDNA Transposable ElementsViral Fusion Proteins

Identifiers

PMID33035269
PMCPMC7577504
OpenAlexW3092025456

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.