ArticleRice (New York, N.Y.)2020
Characterization of the Leaf Microbiome from Whole-Genome Sequencing Data of the 3000 Rice Genomes Project.
Article in Rice (New York, N.Y.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed.
- Exploring sagebrush leaf microbial metagenomes from deep, host-derived sequencing.Microbiology spectrum · 2026Article
- Medicago truncatula genotype drives the plant nutritional strategy and its associated rhizosphere bacterial communities.The New phytologist · 2025Article
- Article
- Dynamic interaction of antibiotic resistance between plant microbiome and organic fertilizers: sources, dissemination, and health risks.World journal of microbiology & biotechnology · 2024Review
- Toward Ecologically Relevant Genetics of Interactions Between Host Plants and Plant Growth-Promoting Bacteria.Advanced genetics (Hoboken, N.J.) · 2024Article
- The ancestral environment of teosinte populations shapes their root microbiome.Environmental microbiome · 2024Article
- Domestication and Genetic Improvement Alter the Symbiotic Microbiome Structure and Function of Tomato Leaf and Fruit Pericarp.Microorganisms · 2024Article
- Domestication and the evolution of crops: variable syndromes, complex genetic architectures, and ecological entanglements.The Plant cell · 2024Review
- Phenazine biosynthesis protein MoPhzF regulates appressorium formation and host infection through canonical metabolic and noncanonical signaling function in Magnaporthe oryzae.The New phytologist · 2024Article
- Seeing in the dark: a metagenomic approach can illuminate the drivers of plant disease.Frontiers in plant science · 2024Article
- Genetic Mapping of the Root Mycobiota in Rice and its Role in Drought Tolerance.Rice (New York, N.Y.) · 2023Article
- The Genetic Architecture of Adaptation to Leaf and Root Bacterial Microbiota in Arabidopsis thaliana.Molecular biology and evolution · 2023Article
- Plant Microbiome Engineering: Hopes or Hypes.Biology · 2022Review
- Dynamic character displacement among a pair of bacterial phyllosphere commensals in situ.Nature communications · 2022Article
- Microbial Contributions for Rice Production: From Conventional Crop Management to the Use of 'Omics' Technologies.International journal of molecular sciences · 2022Review
- Decrypting phytomicrobiome of the neurotoxic actinorhizal species,Frontiers in microbiology · 2022Article
- Next Generation Rice Disease Research.Rice (New York, N.Y.) · 2021Article
- Holo-omics for deciphering plant-microbiome interactions.Microbiome · 2021Review
- Niche Specialization and Functional Overlap of Bamboo Leaf and Root Microbiota.Frontiers in microbiology · 2020Article
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Authors and funding
8 authors.
Funding
Abstract
backgroundThe crop microbial communities are shaped by interactions between the host, microbes and the environment, however, their relative contribution is beginning to be understood. Here, we explore these interactions in the leaf bacterial community across 3024 rice accessions.
findingsBy using unmapped DNA sequencing reads as microbial reads, we characterized the structure of the rice bacterial microbiome. We identified central bacteria taxa that emerge as microbial "hubs" and may have an influence on the network of host-microbe interactions. We found regions in the rice genome that might control the assembly of these microbial hubs. To our knowledge this is one of the first studies that uses raw data from plant genome sequencing projects to characterize the leaf bacterial communities.
conclusionWe showed, that the structure of the rice leaf microbiome is modulated by multiple interactions among host, microbes, and environment. Our data provide insight into the factors influencing microbial assemblage in the rice leaf and also opens the door for future initiatives to modulate rice consortia for crop improvement efforts.
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