Evidence map›Paper›PMID 33033117›Full record

ArticleDevelopment (Cambridge, England)2020

Perturbation analysis of a multi-morphogen Turing reaction-diffusion stripe patterning system reveals key regulatory interactions.

Andrew D Economou, Nicholas A M Monk, Jeremy B A Green

Open access · hybridAbstract read
In one paragraph

Article in Development (Cambridge, England), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Periodic pattern formation during embryonic development.Biochemical Society transactions · 2024
    Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Modern perspectives on near-equilibrium analysis of Turing systems.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2021
    Review
  10. Systems for intricate patterning of the vertebrate anatomy.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2021
    Article
  11. Review
  12. Bespoke Turing Systems.Bulletin of mathematical biology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Andrew D EconomouDepartment of Craniofacial Development & Stem Cell Biology, King's College London, London, SE1 9RT, UK jeremy.green@kcl.ac.uk andrew.economou@crick.ac.uk.ORCID 0000-0002-5193-0748
Nicholas A M MonkSchool of Mathematics and Statistics, University of Sheffield, Sheffield, S3 7RH, UK.ORCID 0000-0002-5465-4857
Jeremy B A GreenDepartment of Craniofacial Development & Stem Cell Biology, King's College London, London, SE1 9RT, UK jeremy.green@kcl.ac.uk andrew.economou@crick.ac.uk.ORCID 0000-0002-6102-2620
King's College London · GBUniversity of Sheffield · GB

Funding

Biotechnology and Biological Sciences Research Council BB/J009105/1
6 · The paper itself

Abstract

Periodic patterning is widespread in development and can be modelled by reaction-diffusion (RD) processes. However, minimal two-component RD descriptions are vastly simpler than the multi-molecular events that actually occur and are often hard to relate to real interactions measured experimentally. Addressing these issues, we investigated the periodic striped patterning of the rugae (transverse ridges) in the mammalian oral palate, focusing on multiple previously implicated pathways: FGF, Hh, Wnt and BMP. For each, we experimentally identified spatial patterns of activity and distinct responses of the system to inhibition. Through numerical and analytical approaches, we were able to constrain substantially the number of network structures consistent with the data. Determination of the dynamics of pattern appearance further revealed its initiation by 'activators' FGF and Wnt, and 'inhibitor' Hh, whereas BMP and mesenchyme-specific-FGF signalling were incorporated once stripes were formed. This further limited the number of possible networks. Experimental constraint thus limited the number of possible minimal networks to 154, just 0.004% of the number of possible diffusion-driven instability networks. Together, these studies articulate the principles of multi-morphogen RD patterning and demonstrate the utility of perturbation analysis for constraining RD systems.This article has an associated 'The people behind the papers' interview.

Indexed as

Body PatterningSignal TransductionAnimalsComputer SimulationDiffusionEmbryo, MammalianFeedbackGene Expression Regulation, DevelopmentalMiceModels, BiologicalTranscription, GeneticMorphogensPalatePatterningReaction-diffusionRugae

Identifiers

PMID33033117
PMCPMC7648603
OpenAlexW3092197544

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.