Evidence map›Paper›PMID 33031499›Full record

ArticleBioinformatics (Oxford, England)2021

Identifiers.org: Compact Identifier services in the cloud.

Manuel Bernal-Llinares, Javier Ferrer-Gómez, Nick Juty, Carole Goble, Sarala M Wimalaratne, Henning Hermjakob

Abstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. MantaID: a machine learning-based tool to automate the identification of biological database IDs.Database : the journal of biological databases and curation · 2023
    Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Manuel Bernal-LlinaresEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, CB10 1SD Cambridge, UK.ORCID 0000-0002-7368-180X
Javier Ferrer-GómezEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, CB10 1SD Cambridge, UK.
Nick JutyDepartment of Computer Science, University of Manchester, M139PL Manchester, UK.
Carole GobleDepartment of Computer Science, University of Manchester, M139PL Manchester, UK.
Sarala M WimalaratneEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, CB10 1SD Cambridge, UK.
Henning HermjakobEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, CB10 1SD Cambridge, UK.

Funding

Towards a FAIR Digital Ecosystem in the CloudOT3OD025456 · OD · HARVARD UNIVERSITY · PI CROSAS, MERCE · 2018 to 2018
$647k
CORBELEOSClife 824087European CommissionEuropean Molecular Biology LaboratoryEuropean Union's Horizon 2020 research and innovation programme 777523 FREYAH2020 654248H2020 676559H2020-EINFRA-2014-2 654039IMI 802750NIH HHS OT3 OD025456US National Institutes of Health OT3OD025456
6 · The paper itself

Abstract

motivationSince its launch in 2010, Identifiers.org has become an important tool for the annotation and cross-referencing of Life Science data. In 2016, we established the Compact Identifier (CID) scheme (prefix: accession) to generate globally unique identifiers for data resources using their locally assigned accession identifiers. Since then, we have developed and improved services to support the growing need to create, reference and resolve CIDs, in systems ranging from human readable text to cloud-based e-infrastructures, by providing high availability and low-latency cloud-based services, backed by a high-quality, manually curated resource.

resultsWe describe a set of services that can be used to construct and resolve CIDs in Life Sciences and beyond. We have developed a new front end for accessing the Identifiers.org registry data and APIs to simplify integration of Identifiers.org CID services with third-party applications. We have also deployed the new Identifiers.org infrastructure in a commercial cloud environment, bringing our services closer to the data. AVAILABILITYAND IMPLEMENTATION: https://identifiers.org.

Indexed as

Biological Science DisciplinesCloud ComputingHumans

Identifiers

PMID33031499
PMCPMC8289372

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.