Evidence map›Paper›PMID 33029857›Full record

ArticleCell proliferation2020

Histone H3K79 demethylation by KDM2B facilitates proper DNA replication through PCNA dissociation from chromatin.

Joo-Young Kang, Jin Woo Park, Ja Young Hahm, Hyeonsoo Jung, Sang-Beom Seo

Open access · goldAbstract read
In one paragraph

Article in Cell proliferation, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Joo-Young KangDepartment of Life Science, College of Natural Sciences, Chung-Ang University, Seoul, Korea.
Jin Woo ParkDepartment of Life Science, College of Natural Sciences, Chung-Ang University, Seoul, Korea.
Ja Young HahmDepartment of Life Science, College of Natural Sciences, Chung-Ang University, Seoul, Korea.
Hyeonsoo JungDepartment of Life Science, College of Natural Sciences, Chung-Ang University, Seoul, Korea.
Sang-Beom SeoDepartment of Life Science, College of Natural Sciences, Chung-Ang University, Seoul, Korea.ORCID https://orcid.org/0000-0003-4709-6022
Chung-Ang University · KR

Funding

Chung-Ang University Research Grants in 2020National Research Foundation of Korea (NRF) grant funded by the Korea government Ministry of Science, Information and Communication Technology (MSIT) NRF-2020R1F1A1064241
6 · The paper itself

Abstract

objectivesThe level of histone H3 lysine 79 methylation is regulated by the cell cycle and involved in cell proliferation. KDM2B is an H3K79 demethylase. Proliferating cell nuclear antigen (PCNA) is a component of the DNA replication machinery. This study aimed at elucidating a molecular link between H3K79me recognition of PCNA and cell cycle control. MATERIALS AND

methodsWe generated KDM2B-depleted 293T cells and histone H3-K79R mutant-expressing 293T cells. Western blots were primarily utilized to examine the H3K79me level and its effect on subsequent PCNA dissociation from chromatin. We applied IP, peptide pull-down, isothermal titration calorimetry (ITC) and ChIP experiments to show the PCNA binding towards methylated H3K79 and DNA replication origins. Flow cytometry, MTT, iPOND and DNA fibre assays were used to assess the necessity of KDM2B for DNA replication and cell proliferation.

resultsWe revealed that KDM2B-mediated H3K79 demethylation regulated cell cycle progression. We found that PCNA bound chromatin in an H3K79me-dependent manner during S phase. KDM2B was responsible for the timely dissociation of PCNA from chromatin, allowing to efficient DNA replication. Depletion of KDM2B aberrantly enriched chromatin with PCNA and caused slow dissociation of residual PCNA, leading to a negative effect on cell proliferation.

conclusionsWe suggested a novel interaction between PCNA and H3K79me. Thus, our findings provide a new mechanism of KDM2B in regulation of DNA replication and cell proliferation.

Indexed as

DNA ReplicationCell CycleCell ProliferationChromatinDemethylationF-Box ProteinsHEK293 CellsHistonesHumansJumonji Domain-Containing Histone DemethylasesProliferating Cell Nuclear AntigenS PhaseChromatinF-Box ProteinsHistonesJumonji Domain-Containing Histone DemethylasesKDM2A protein, humanPCNA protein, humanProliferating Cell Nuclear Antigencell cyclechromatinDNA replicationH3K79 demethylationKDM2BPCNA

Identifiers

PMID33029857
PMCPMC7653264
OpenAlexW3092130081

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.