ArticleScientific reports2020
Assembly of the durian chloroplast genome using long PacBio reads.
Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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14 citing papers in PubMed, 27 citations in OpenAlex.
- Applications of omics in deciphering the unique traits of durian, the king of fruits.Plant molecular biology · 2026Review
- The Comparative Study on Molecular Phylogenetics and Development of Microsatellite Primers From Durian Chloroplast Genomes.Ecology and evolution · 2025Article
- Comparative Chloroplast Genomes and Phylogenetic Relationships of True Mangrove SpeciesCurrent issues in molecular biology · 2025Article
- Comparative genomics and phylogenetic analysis of six Malvaceae species based on chloroplast genomes.BMC plant biology · 2024Article
- The Complete Mitochondrial Genome ofGenes · 2024Article
- The complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2024Article
- PacBio long read-assembled draft genome of Pythium insidiosum strain Pi-S isolated from a Thai patient with pythiosis.BMC research notes · 2023Article
- Plastid Genome Assembly Using Long-read data.Molecular ecology resources · 2023Article
- Plastomes ofPlants (Basel, Switzerland) · 2023Article
- Transcriptome analysis during fruit developmental stages in durian (Durio zibethinus Murr.) var. D24.Genetics and molecular biology · 2023Article
- The complete chloroplast genome sequence ofMitochondrial DNA. Part B, Resources · 2022Article
- Chromosome-scale reference genome assembly of a diploid potato clone derived from an elite variety.G3 (Bethesda, Md.) · 2021Article
- Genomic Approaches for Improvement of Tropical Fruits: Fruit Quality, Shelf Life and Nutrient Content.Genes · 2021Review
- Insights Into Comparative Analyses and Phylogenomic Implications ofFrontiers in genetics · 2021Article
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Authors and funding
10 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We have assembled the complete sequence of the Durio zibethinus chloroplast genome using long PacBio reads. Durian is a valuable commercial tree that produces durian fruit, which is popular in Southeast Asia. The chloroplast genome assembled into a single 143 kb cyclic contig that contained 111 genes. There were 46 short direct repeats (45 to 586 bp) and five short inverted repeats (63 to 169 bp). The long reads that were used for the assembly span the entire chloroplast with > 10 kb overlaps and multiple long reads join the start of the contig to the end of the contig. The durian chloroplast was found to lack the large inverted repeat that is common in chloroplast genomes. An additional 24 durian varieties were sequenced and compared to the assembly and found to also lack the large inverted repeat. There were nine SNPs among the varieties.
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