Evidence map›Paper›PMID 33028813›Full record

ArticleNature communications2020

A fluoride-responsive genetic circuit enables in vivo biofluorination in engineered Pseudomonas putida.

Patricia Calero, Daniel C Volke, Phillip T Lowe, Charlotte H Gotfredsen, David O'Hagan, Pablo I Nikel

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
5.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 93 citations in OpenAlex.

  1. Adaptive evolution ofJournal of bacteriology · 2026
    Article
  2. Fluoride triggers lysis inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. RecombinantmBio · 2024
    Article
  15. Review
  16. Article
  17. Article
  18. ACS omega · 2023
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Patricia CaleroThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800 Kgs, Lyngby, Denmark.
Daniel C VolkeThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800 Kgs, Lyngby, Denmark.
Phillip T LoweSchool of Chemistry, University of St. Andrews, KY16 9ST St, Andrews, UK.
Charlotte H GotfredsenDepartment of Chemistry, Technical University of Denmark, 2800 Kgs, Lyngby, Denmark.
David O'HaganSchool of Chemistry, University of St. Andrews, KY16 9ST St, Andrews, UK.
Pablo I NikelThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800 Kgs, Lyngby, Denmark. pabnik@biosustain.dtu.dk.ORCID http://orcid.org/0000-0002-9313-7481
Novo Nordisk Foundation · DKUniversity of St Andrews · GBTechnical University of Denmark · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fluorine is a key element in the synthesis of molecules broadly used in medicine, agriculture and materials. Addition of fluorine to organic structures represents a unique strategy for tuning molecular properties, yet this atom is rarely found in Nature and approaches to integrate fluorometabolites into the biochemistry of living cells are scarce. In this work, synthetic gene circuits for organofluorine biosynthesis are implemented in the platform bacterium Pseudomonas putida. By harnessing fluoride-responsive riboswitches and the orthogonal T7 RNA polymerase, biochemical reactions needed for in vivo biofluorination are wired to the presence of fluoride (i.e. circumventing the need of feeding expensive additives). Biosynthesis of fluoronucleotides and fluorosugars in engineered P. putida is demonstrated with mineral fluoride both as only fluorine source (i.e. substrate of the pathway) and as inducer of the synthetic circuit. This approach expands the chemical landscape of cell factories by providing alternative biosynthetic strategies towards fluorinated building-blocks.

Indexed as

Gene Regulatory NetworksBacterial ProteinsBiosynthetic PathwaysDNA-Directed RNA PolymerasesFluoridesFluorineHalogenationMembrane Transport ProteinsMetabolic EngineeringMutationPseudomonas putidaRiboswitchRNA, BacterialSynthetic BiologyViral ProteinsBacterial Proteinsbacteriophage T7 RNA polymeraseDNA-Directed RNA PolymerasesFluoridesFluorineMembrane Transport ProteinsRiboswitchRNA, BacterialViral Proteins

Identifiers

PMID33028813
PMCPMC7541441
OpenAlexW3092001104

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.