Evidence map›Paper›PMID 33028638›Full record

ArticleThe Journal of biological chemistry2020

The Arg-293 of Cryptochrome1 is responsible for the allosteric regulation of CLOCK-CRY1 binding in circadian rhythm.

Seref Gul, Cihan Aydin, Onur Ozcan, Berke Gurkan, Saliha Surme, Ibrahim Baris, Ibrahim Halil Kavakli

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
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  4. Circadian period is compensated for repressor protein turnover rates in single cells.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Seref GulDepartment of Chemical and Biological Engineering, Koc University, Istanbul, Turkey.
Cihan AydinDepartment of Molecular Biology and Genetics, Istanbul Medeniyet University, Istanbul, Turkey.
Onur OzcanDepartment of Molecular Biology and Genetics, Koc University, Istanbul, Turkey.
Berke GurkanDepartment of Molecular Biology and Genetics, Koc University, Istanbul, Turkey.
Saliha SurmeDepartment of Molecular Biology and Genetics, Koc University, Istanbul, Turkey.
Ibrahim BarisDepartment of Molecular Biology and Genetics, Koc University, Istanbul, Turkey.
Ibrahim Halil KavakliDepartment of Chemical and Biological Engineering, Koc University, Istanbul, Turkey; Department of Molecular Biology and Genetics, Koc University, Istanbul, Turkey. Electronic address: hkavakli@ku.edu.tr.
Koç University · TRIstanbul Medeniyet University · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mammalian circadian clocks are driven by transcription/translation feedback loops composed of positive transcriptional activators (BMAL1 and CLOCK) and negative repressors (CRYPTOCHROMEs (CRYs) and PERIODs (PERs)). CRYs, in complex with PERs, bind to the BMAL1/CLOCK complex and repress E-box-driven transcription of clock-associated genes. There are two individual CRYs, with CRY1 exhibiting higher affinity to the BMAL1/CLOCK complex than CRY2. It is known that this differential binding is regulated by a dynamic serine-rich loop adjacent to the secondary pocket of both CRYs, but the underlying features controlling loop dynamics are not known. Here we report that allosteric regulation of the serine-rich loop is mediated by Arg-293 of CRY1, identified as a rare

Indexed as

Circadian RhythmCLOCK ProteinsCryptochromesMolecular Dynamics SimulationAllosteric RegulationAmino Acid SubstitutionAnimalsArginineARNTL Transcription FactorsHEK293 CellsHumansMiceMice, KnockoutMutation, MissensePeriod Circadian ProteinsPolymorphism, Single NucleotideArginineARNTL Transcription FactorsBmal1 protein, mouseClock protein, mouseCLOCK ProteinsCry1 protein, mouseCry2 protein, mouseCryptochromesPer2 protein, mousePeriod Circadian Proteinsallosteric regulationallosterycircadian rhythmCLOCKclock genecryptochromeCryptochrome 1gene regulation

Identifiers

PMID33028638
PMCPMC7863883
OpenAlexW3092527891

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.