Evidence map›Paper›PMID 33025726›Full record

ArticleMolecular plant pathology2020

The putative sensor histidine kinase PhcK is required for the full expression of phcA encoding the global transcriptional regulator to drive the quorum-sensing circuit of Ralstonia solanacearum strain OE1-1.

Wakana Senuma, Chika Takemura, Kazusa Hayashi, Shiho Ishikawa, Akinori Kiba, Kouhei Ohnishi, Kenji Kai, Yasufumi Hikichi

Open access · goldAbstract read
In one paragraph

Article in Molecular plant pathology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Wakana SenumaFaculty of Agriculture and Marine Science, Kochi University, Nankoku, Japan.
Chika TakemuraFaculty of Agriculture and Marine Science, Kochi University, Nankoku, Japan.
Kazusa HayashiFaculty of Agriculture and Marine Science, Kochi University, Nankoku, Japan.
Shiho IshikawaFaculty of Agriculture and Marine Science, Kochi University, Nankoku, Japan.
Akinori KibaFaculty of Agriculture and Marine Science, Kochi University, Nankoku, Japan.ORCID 0000-0003-3110-3611
Kouhei OhnishiFaculty of Agriculture and Marine Science, Kochi University, Nankoku, Japan.ORCID 0000-0001-7022-8703
Kenji KaiGraduate School of Life and Environmental Sciences, Osaka Prefecture University, Sakai, Japan.ORCID 0000-0002-4036-9959
Yasufumi HikichiFaculty of Agriculture and Marine Science, Kochi University, Nankoku, Japan.ORCID 0000-0002-5955-9197
Kōchi University · JPOsaka Prefecture University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A gram-negative plant-pathogenic bacterium Ralstonia solanacearum strain OE1-1 produces and extracellularly secretes methyl 3-hydroxymyristate (3-OH MAME), and senses the chemical as a quorum-sensing (QS) signal, activating QS. During QS a functional global transcriptional regulator PhcA, through the 3-OH MAME-dependent two-component system, induces the production of virulence factors including a major extracellular polysaccharide EPS I and ralfuranone. To elucidate the mechanisms of phcA regulation underlying the QS system, among Tn5-mutants from the strain OE1-1, we identified a mutant of RSc1351 gene (phcK), encoding a putative sensor histidine kinase, that exhibited significantly decreased QS-dependent cell aggregation. We generated a phcK-deletion mutant (ΔphcK) that produced significantly less EPS I and ralfuranone than the wild-type strain OE1-1. Quantitative reverse transcription PCR assays showed that the phcA expression level was significantly down-regulated in the ΔphcK mutant but not in other QS mutants. The transcriptome data generated with RNA sequencing technology revealed that the expression levels of 88.2% of the PhcA-positively regulated genes were down-regulated in the ΔphcK mutant, whereas the expression levels of 85.9% of the PhcA-negatively regulated genes were up-regulated. Additionally, the native phcK-expressing complemented ΔphcK strain and the ΔphcK mutant transformed with phcA controlled by a constitutive promoter recovered their cell aggregation phenotypes. Considered together, the results of this study indicate that phcK is required for full phcA expression, thereby driving the QS circuit of R. solanacearum strain OE1-1. This is the first report of the phcA transcriptional regulation of R. solanacearum.

Indexed as

TranscriptomeBacterial ProteinsCell AggregationDNA-Binding ProteinsDNA Transposable ElementsGene Expression Regulation, BacterialHistidine KinaseMutagenesis, InsertionalMyristatesPromoter Regions, GeneticQuorum SensingRalstonia solanacearumSequence Analysis, RNATranscription FactorsVirulence FactorsBacterial ProteinsDNA-Binding ProteinsDNA Transposable ElementsHistidine Kinasemethyl 3-hydroxymyristateMyristatesPhcA protein, Ralstonia solanacearumTranscription FactorsVirulence FactorsPhcAPhcKquorum sensingRalstonia solanacearum

Identifiers

PMID33025726
PMCPMC7694676
OpenAlexW3092208013

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.