Evidence map›Paper›PMID 33025377›Full record

ReviewJournal of clinical immunology2021

Novel Frameshift Autosomal Recessive Loss-of-Function Mutation in SMARCD2 Encoding a Chromatin Remodeling Factor Mediates Granulopoiesis.

Esra Yucel, Ibrahim Serhat Karakus, Ana Krolo, Ayca Kiykim, Raul Jimenez Heredia, Zeynep Tamay, Funda Erol Cipe, Elif Karakoc-Aydiner, Ahmet Ozen, Serap Karaman and 2 more

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In one paragraph

Review in Journal of clinical immunology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. SMARCD1 and Its Functional Relevance in SWI/SNF and Cancer.International journal of molecular sciences · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 3 countries.

Esra Yucel *Istanbul Faculty of Medicine, Division of Pediatric Allergy and Immunology, Istanbul University, Istanbul, Turkey.
Ibrahim Serhat Karakus *Faculty of Medicine, Division of Pediatric Allergy/Immunology, Marmara University, Fevzi Çakmak Mah. No: 41, Pendik, Istanbul, Turkey.
Ana KroloLudwig Boltzmann Institute for Rare and Undiagnosed Diseases, Vienna, Austria.
Ayca KiykimFaculty of Medicine, Division of Pediatric Allergy and Immunology, Istanbul Cerrahpasa University, Istanbul, Turkey.
Raul Jimenez HerediaLudwig Boltzmann Institute for Rare and Undiagnosed Diseases, Vienna, Austria.
Zeynep TamayIstanbul Faculty of Medicine, Division of Pediatric Allergy and Immunology, Istanbul University, Istanbul, Turkey.
Funda Erol CipeFaculty of Medicine, Department of Pediatrics, Istinye University, Istanbul, Turkey.
Elif Karakoc-AydinerFaculty of Medicine, Division of Pediatric Allergy/Immunology, Marmara University, Fevzi Çakmak Mah. No: 41, Pendik, Istanbul, Turkey.
Ahmet OzenFaculty of Medicine, Division of Pediatric Allergy/Immunology, Marmara University, Fevzi Çakmak Mah. No: 41, Pendik, Istanbul, Turkey.
Serap KaramanIstanbul Faculty of Medicine, Division of Pediatric Hematology and Oncology, Istanbul University, Istanbul, Turkey.
Kaan BoztugLudwig Boltzmann Institute for Rare and Undiagnosed Diseases, Vienna, Austria.
Safa BarisFaculty of Medicine, Division of Pediatric Allergy/Immunology, Marmara University, Fevzi Çakmak Mah. No: 41, Pendik, Istanbul, Turkey. safabaris@hotmail.com.ORCID 0000-0002-4730-9422
Austrian Academy of Sciences · ATIstanbul University · TRMarmara University · TRIstanbul University-Cerrahpaşa · TRIstinye University · TRJeffrey Modell Foundation · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeRecently, a new form of congenital neutropenia that is caused by germline biallelic loss-of-function mutations in the SMARCD2 gene was described in four patients. Given the rarity of the condition, the clinical spectrum of the disease has remained elusive. We here report a new patient with a novel frameshift mutation and compare our patient with the previously reported SMARCD2-mutant patients, aiming to provide a more comprehensive understanding of the natural course of the disease.

methodsClinical and laboratory findings of all reported patients were reviewed. Next-generation sequencing was performed to identify the causative genetic defect. Data on the hematopoietic stem cell transplantation including stem cell sources, conditioning regimen, engraftment, graft-versus-host disease, and infections were also collected.

resultsAn 11-year-old female patient had a variety of infections including sepsis, deep tissue abscesses, otitis, pneumonia, gingivitis, and diarrhea since infancy. A novel homozygous mutation in SMARCD2 (c.93delG, p.Ala32Argfs*80) was detected. Bone marrow examination showed hypocellularity and decreased neutrophils with diminished granules and myeloid dysplasia, but no blast excess as in previously reported patients. The neutropenia was non-responsive even to higher doses of granulocyte colony-stimulating factor (G-CSF); therefore, the patient was transplanted at 10 years of age from a HLA-A allele-mismatched unrelated donor using a reduced toxicity conditioning regimen and recovered successfully. Compared with the previous four cases, our patient showed longer survival before transplantation without blastic transformation.

conclusionDistinctive myeloid features and long-term follow-up including therapy options are presented for the newly described case of SMARCD2 deficiency. This disorder is apparent at infancy and requires early transplantation due to the unrelenting disease course despite conventional therapy.

Indexed as

Frameshift MutationGenes, RecessiveAllelesBiopsyBone MarrowChildChromatin Assembly and DisassemblyChromosomal Proteins, Non-HistoneDNA Mutational AnalysisFemaleGenetic Association StudiesGenetic Predisposition to DiseaseGenotypeGraft vs Host DiseaseGranulocytesHematopoietic Stem Cell TransplantationChromosomal Proteins, Non-HistoneSMARCD2 protein, humanCEBPEhematopoietic stem cell transplantationneutropeniaSMARCD2specific granule deficiencySWI/SNF complex

Identifiers

PMID33025377
OpenAlexW3092510017

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.