Evidence map›Paper›PMID 33025156›Full record

ArticlePlanta2020

Comparative transcriptome analyses provide novel insights into etiolated shoot development of walnut (Juglans regia L.).

Beibei Wang, Yan Zhang, Ningguang Dong, Yonghao Chen, Yunqi Zhang, Yanbin Hao, Jianxun Qi

Abstract read
PubMed Publisher
In one paragraph

Article in Planta, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Beibei WangBeijing Academy of Forestry and Pomology Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture and Rural Affairs, Beijing Engineering Research Center for Deciduous Fruit Trees, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100093, China.ORCID http://orcid.org/0000-0002-7433-368X
Yan ZhangCollege of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206, China.
Ningguang DongBeijing Academy of Forestry and Pomology Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture and Rural Affairs, Beijing Engineering Research Center for Deciduous Fruit Trees, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100093, China.
Yonghao ChenBeijing Academy of Forestry and Pomology Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture and Rural Affairs, Beijing Engineering Research Center for Deciduous Fruit Trees, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100093, China.
Yunqi ZhangBeijing Academy of Forestry and Pomology Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture and Rural Affairs, Beijing Engineering Research Center for Deciduous Fruit Trees, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100093, China.
Yanbin HaoBeijing Academy of Forestry and Pomology Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture and Rural Affairs, Beijing Engineering Research Center for Deciduous Fruit Trees, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100093, China. jinhetaojht@263.net.
Jianxun QiBeijing Academy of Forestry and Pomology Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture and Rural Affairs, Beijing Engineering Research Center for Deciduous Fruit Trees, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100093, China. qijx@263.net.
Beijing Academy of Agricultural and Forestry Sciences · CNBeijing University of Agriculture · CN

Funding

Postdoctoral fund of Beijing Academy of Agriculture and Forestry Sciences 2018-ZZ-022
6 · The paper itself

Abstract

MAIN

conclusionIn general, genes promoting IAA, CTK GA and ethylene biosynthesis were upregulated, while genes participating in ABA, chlorophyll and starch biosynthesis pathways performed opposite tendency during etiolation. Etiolation as a method for rejuvenation plays an important role in the vegetative propagation of woody plants. However, the molecular mechanism of etiolated shoot development remains unclear. In this study, we investigated changes at different etiolation stages of Juglans regia. The histology and transcriptome of J. regia were analysed using etiolated stems, which were treated in darkness for 30, 60, 90 days. The results showed that the ratios of pith (Pi) diameter/stem diameter (D), cortex (Co) width/D, and phloem (Ph) width/D increased, while the ratio of xylem (Xy) width/D decreased after etiolation, and the difference in these ratios between etiolated stems and the control was more significant at 60 days than 90 days. Differentially expressed genes (DEGs) were significantly enriched in pathways such as plant hormone biosynthesis and signal transduction, chlorophyll biosynthesis and degradation, and starch and sucrose metabolism. The difference in the contents of indole-3-acetic acid (IAA), abscisic acid (ABA), sugar and chlorophyll between etiolated stems and the control increased with increasing treatment duration; in contrast, the concentrations of gibberellin (GA), zeatin (ZT), and starch, as well as the difference between the etiolated stems and control were lowest at 60 days among the three stages. On the whole, the positive effect of etiolation on the rejuvenation of walnut stems changed as the treatment period increased. The present investigation lays a foundation for future studies on the effect of etiolation on rejuvenation and for promoting the efficiency of vegetative propagation.

Indexed as

JuglansPlant ShootsTranscriptomeEtiolationGene Expression ProfilingGene Expression Regulation, PlantPlant Growth RegulatorsPlant Growth RegulatorsEtiolationHistologyPlant hormoneRejuvenationTranscriptome

Identifiers

PMID33025156
OpenAlexW3091865774

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.