Evidence map›Paper›PMID 33025059›Full record

ArticleArchives of microbiology2021

Genomic and phenotypic analysis of siderophore-producing Rhodococcus qingshengii strain S10 isolated from an arid weathered serpentine rock environment.

Irina V Khilyas, Alyona V Sorokina, Maria I Markelova, Maksim Belenikin, Lilia Shafigullina, Rezeda I Tukhbatova, Elena I Shagimardanova, Jochen Blom, Margarita R Sharipova, Michael F Cohen

Abstract read
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In one paragraph

Article in Archives of microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

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  4. Complete genome sequence ofMicrobiology resource announcements · 2024
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  7. Genome-Based Characterization of Plant-AssociatedFrontiers in microbiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Irina V KhilyasDepartment of Microbiology, Institute of Fundamental Medicine and Biology, Kazan (Volga Region), Federal University, Kazan, Russian Federation. irina.khilyas@gmail.com.ORCID http://orcid.org/0000-0002-2261-1051
Alyona V SorokinaDepartment of Microbiology, Institute of Fundamental Medicine and Biology, Kazan (Volga Region), Federal University, Kazan, Russian Federation.
Maria I MarkelovaDepartment of Microbiology, Institute of Fundamental Medicine and Biology, Kazan (Volga Region), Federal University, Kazan, Russian Federation.
Maksim BelenikinDepartment of Molecular and Biological Physics, Moscow Institute of Physics and Technology (State University), Dolgoprudny, Russia.
Lilia ShafigullinaDepartment of Microbiology, Institute of Fundamental Medicine and Biology, Kazan (Volga Region), Federal University, Kazan, Russian Federation.
Rezeda I TukhbatovaLaboratory of Structural Biology, Institute of Fundamental Medicine and Biology, Kazan (Volga Region), Federal University, Kazan, Russian Federation.
Elena I ShagimardanovaLaboratory of Extreme Biology, Institute of Fundamental Medicine and Biology, Kazan (Volga Region), Federal University, Kazan, Russian Federation.
Jochen BlomBioinformatics and Systems Biology, Justus-Liebig-University Giessen, Giessen, Germany.
Margarita R SharipovaDepartment of Microbiology, Institute of Fundamental Medicine and Biology, Kazan (Volga Region), Federal University, Kazan, Russian Federation.
Michael F CohenDepartment of Biology, Sonoma State University, Rohnert Park, CA, USA.
Kazan Federal University · RUJustus-Liebig-Universität Gießen · DEMoscow Institute of Physics and Technology · RUSonoma State University · US

Funding

Russian Science Foundation 19-74-00062
6 · The paper itself

Abstract

The success of members of the genus Rhodococcus in colonizing arid rocky environments is owed in part to desiccation tolerance and an ability to extract iron through the secretion and uptake of siderophores. Here, we report a comprehensive genomic and taxonomic analysis of Rhodococcus qingshengii strain S10 isolated from eathered serpentine rock at the arid Khalilovsky massif, Russia. Sequence comparisons of whole genomes and of selected marker genes clearly showed strain S10 to belong to the R. qingshengii species. Four prophage sequences within the R. qingshengii S10 genome were identified, one of which encodes for a putative siderophore-interacting protein. Among the ten non-ribosomal peptides synthase (NRPS) clusters identified in the strain S10 genome, two show high homology to those responsible for siderophore synthesis. Phenotypic analyses demonstrated that R. qingshengii S10 secretes siderophores and possesses adaptive features (tolerance of up to 8% NaCl and pH 9) that should enable survival in its native habitat within dry serpentine rock.

Indexed as

Desert ClimateEnvironmentGenome, BacterialIronPeptide SynthasesProphagesRhodococcusRussiaSiderophoresIronnon-ribosomal peptide synthasePeptide SynthasesSiderophoresDesiccationPan-genomePhenotypeRhodococcus qingshengiiSerpentiniteSiderophores

Identifiers

PMID33025059
OpenAlexW3092284710

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.