Evidence map›Paper›PMID 33024223›Full record

ArticleScientific reports2020

Sofosbuvir terminated RNA is more resistant to SARS-CoV-2 proofreader than RNA terminated by Remdesivir.

Steffen Jockusch, Chuanjuan Tao, Xiaoxu Li, Minchen Chien, Shiv Kumar, Irina Morozova, Sergey Kalachikov, James J Russo, Jingyue Ju

Abstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 1 synthesis or guideline pooled it.

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  14. COVID-19 Therapeutic Potential of Natural Products.International journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Steffen Jockusch *Center for Genome Technology and Biomolecular Engineering, Columbia University, New York, NY, 10027, USA.
Chuanjuan Tao *Center for Genome Technology and Biomolecular Engineering, Columbia University, New York, NY, 10027, USA.
Xiaoxu LiCenter for Genome Technology and Biomolecular Engineering, Columbia University, New York, NY, 10027, USA.
Minchen ChienCenter for Genome Technology and Biomolecular Engineering, Columbia University, New York, NY, 10027, USA.
Shiv KumarCenter for Genome Technology and Biomolecular Engineering, Columbia University, New York, NY, 10027, USA.
Irina MorozovaCenter for Genome Technology and Biomolecular Engineering, Columbia University, New York, NY, 10027, USA.
Sergey KalachikovCenter for Genome Technology and Biomolecular Engineering, Columbia University, New York, NY, 10027, USA.
James J RussoCenter for Genome Technology and Biomolecular Engineering, Columbia University, New York, NY, 10027, USA.
Jingyue JuCenter for Genome Technology and Biomolecular Engineering, Columbia University, New York, NY, 10027, USA. dj222@columbia.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SARS-CoV-2 is responsible for COVID-19, resulting in the largest pandemic in over a hundred years. After examining the molecular structures and activities of hepatitis C viral inhibitors and comparing hepatitis C virus and coronavirus replication, we previously postulated that the FDA-approved hepatitis C drug EPCLUSA (Sofosbuvir/Velpatasvir) might inhibit SARS-CoV-2. We subsequently demonstrated that Sofosbuvir triphosphate is incorporated by the relatively low fidelity SARS-CoV and SARS-CoV-2 RNA-dependent RNA polymerases (RdRps), serving as an immediate polymerase reaction terminator, but not by a host-like high fidelity DNA polymerase. Other investigators have since demonstrated the ability of Sofosbuvir to inhibit SARS-CoV-2 replication in lung and brain cells; additionally, COVID-19 clinical trials with EPCLUSA and with Sofosbuvir plus Daclatasvir have been initiated in several countries. SARS-CoV-2 has an exonuclease-based proofreader to maintain the viral genome integrity. Any effective antiviral targeting the SARS-CoV-2 RdRp must display a certain level of resistance to this proofreading activity. We report here that Sofosbuvir terminated RNA resists removal by the exonuclease to a substantially higher extent than RNA terminated by Remdesivir, another drug being used as a COVID-19 therapeutic. These results offer a molecular basis supporting the current use of Sofosbuvir in combination with other drugs in COVID-19 clinical trials.

Indexed as

Adenosine MonophosphateAlanineAntiviral AgentsBetacoronavirusCoronavirus InfectionsCoronavirus RNA-Dependent RNA PolymeraseCOVID-19Drug DiscoveryDrug RepositioningExonucleasesHepacivirusHepatitis CHumansPandemicsPneumonia, ViralProdrugsAdenosine MonophosphateAlanineAntiviral AgentsCoronavirus RNA-Dependent RNA PolymeraseExonucleasesNSP12 protein, SARS-CoV-2ProdrugsremdesivirRNA-Dependent RNA PolymeraseRNA, ViralSofosbuvirViral Nonstructural Proteins

Identifiers

PMID33024223
PMCPMC7538426

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.