Evidence map›Paper›PMID 33024112›Full record

ArticleNature communications2020

Mechanism and evolution of the Zn-fingernail required for interaction of VARP with VPS29.

Harriet Crawley-Snowdon, Ji-Chun Yang, Nathan R Zaccai, Luther J Davis, Lena Wartosch, Emily K Herman, Nicholas A Bright, James S Swarbrick, Brett M Collins, Lauren P Jackson and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Identification of a VPS29 isoform with restricted association to Retriever and Retromer accessory proteins through autoinhibition.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Review
  4. Article
  5. Review
  6. Structural basis for coupling of the WASH subunit FAM21 with the endosomal SNX27-Retromer complex.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Receptor Recycling by Retromer.Molecular and cellular biology · 2023
    Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Targeting Endosomal Recycling Pathways by Bacterial and Viral Pathogens.Frontiers in cell and developmental biology · 2021
    Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 4 countries.

Harriet Crawley-Snowdon *MRC Laboratory of Molecular Biology Cambridge Biomedical Campus, Francis Crick Ave, Cambridge, CB2 0QH, UK.
Ji-Chun Yang *MRC Laboratory of Molecular Biology Cambridge Biomedical Campus, Francis Crick Ave, Cambridge, CB2 0QH, UK.ORCID http://orcid.org/0000-0003-1933-5372
Nathan R Zaccai *CIMR, The Keith Peters Building, Hills Road, Cambridge, CB2 0QQ, UK.
Luther J DavisCIMR, The Keith Peters Building, Hills Road, Cambridge, CB2 0QQ, UK.
Lena WartoschCIMR, The Keith Peters Building, Hills Road, Cambridge, CB2 0QQ, UK.
Emily K HermanDivision of Infectious Disease, Department of Medicine, University of Alberta, Edmonton, Canada, T6G 2G3.ORCID http://orcid.org/0000-0002-5327-0755
Nicholas A BrightCIMR, The Keith Peters Building, Hills Road, Cambridge, CB2 0QQ, UK.ORCID http://orcid.org/0000-0002-2791-6727
James S SwarbrickPharmacology and Therapeutics, The University of Melbourne, Parkville, Victoria, 3010, Australia.
Brett M CollinsThe University of Queensland, Institute for Molecular Bioscience, St Lucia, QLD, 4072, Australia.ORCID http://orcid.org/0000-0002-6070-3774
Lauren P JacksonCIMR, The Keith Peters Building, Hills Road, Cambridge, CB2 0QQ, UK.ORCID http://orcid.org/0000-0002-3705-6126
Matthew N J SeamanCIMR, The Keith Peters Building, Hills Road, Cambridge, CB2 0QQ, UK.ORCID http://orcid.org/0000-0001-9916-3245
J Paul LuzioCIMR, The Keith Peters Building, Hills Road, Cambridge, CB2 0QQ, UK. jpl10@cam.ac.uk.ORCID http://orcid.org/0000-0003-3912-9760
Joel B DacksDivision of Infectious Disease, Department of Medicine, University of Alberta, Edmonton, Canada, T6G 2G3. dacks@ualberta.ca.ORCID http://orcid.org/0000-0003-4520-5694
David NeuhausMRC Laboratory of Molecular Biology Cambridge Biomedical Campus, Francis Crick Ave, Cambridge, CB2 0QH, UK. dn@mrc-lmb.cam.ac.uk.ORCID http://orcid.org/0000-0002-8561-7485
David J OwenCIMR, The Keith Peters Building, Hills Road, Cambridge, CB2 0QQ, UK. djo30@cam.ac.uk.ORCID http://orcid.org/0000-0002-8351-6322
MRC Laboratory of Molecular Biology · GBQinetiq (United Kingdom) · GBUniversity of Alberta · CAThe University of Melbourne · AUThe University of Queensland · AUVanderbilt University · US

Funding

The molecular role of tepsin in membrane trafficking pathwaysR35GM119525 · NIGMS · VANDERBILT UNIVERSITY · PI Lauren Parker Jackson · 2016 to 2026
$4.3M
Medical Research Council MC_U105178934Medical Research Council MR/R009015/1Medical Research Council U105178934NIGMS NIH HHS R35 GM119525Wellcome Trust 090909/Z/09/ZWellcome Trust 207455/Z/17/Z
6 · The paper itself

Abstract

VARP and TBC1D5 are accessory/regulatory proteins of retromer-mediated retrograde trafficking from endosomes. Using an NMR/X-ray approach, we determined the structure of the complex between retromer subunit VPS29 and a 12 residue, four-cysteine/Zn

Indexed as

Evolution, MolecularCryoelectron MicroscopyCysteineGTPase-Activating ProteinsGuanine Nucleotide Exchange FactorsHeLa CellsHumansMagnetic Resonance SpectroscopyModels, MolecularMultiprotein ComplexesProtein ConformationVesicular Transport ProteinsZincZinc FingersANKRD27 protein, humanCysteineGTPase-Activating ProteinsGuanine Nucleotide Exchange FactorsMultiprotein ComplexesTBC1D5 protein, humanVesicular Transport ProteinsVPS29 protein, humanZinc

Identifiers

PMID33024112
PMCPMC7539009
OpenAlexW3092557360

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.