Evidence map›Paper›PMID 33023222›Full record

ReviewInternational journal of molecular sciences2020

Cytosolic Sensors for Pathogenic Viral and Bacterial Nucleic Acids in Fish.

Miriam Mojzesz, Krzysztof Rakus, Magdalena Chadzinska, Kentaro Nakagami, Gouranga Biswas, Masahiro Sakai, Jun-Ichi Hikima

Open access · goldAbstract readReview
In one paragraph

Review in International journal of molecular sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Transcriptomics of early responses to purifiedFrontiers in immunology · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Microorganisms · 2022
    Article
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Miriam MojzeszDepartment of Evolutionary Immunology, Institute of Zoology and Biomedical Research, Faculty of Biology, Jagiellonian University, Gronostajowa 9, 30-387 Krakow, Poland.
Krzysztof RakusDepartment of Evolutionary Immunology, Institute of Zoology and Biomedical Research, Faculty of Biology, Jagiellonian University, Gronostajowa 9, 30-387 Krakow, Poland.
Magdalena ChadzinskaDepartment of Evolutionary Immunology, Institute of Zoology and Biomedical Research, Faculty of Biology, Jagiellonian University, Gronostajowa 9, 30-387 Krakow, Poland.
Kentaro NakagamiDepartment of Biochemistry and Applied Biosciences, Faculty of Agriculture, University of Miyazaki, Gakuenkibanadai-nishi 1-1, Miyazaki 889-2192, Japan.
Gouranga BiswasKakdwip Research Centre of ICAR-Central Institute of Brackishwater Aquaculture, Kakdwip, South 24 Parganas, West Bengal 743347, India.
Masahiro SakaiDepartment of Biochemistry and Applied Biosciences, Faculty of Agriculture, University of Miyazaki, Gakuenkibanadai-nishi 1-1, Miyazaki 889-2192, Japan.
Jun-Ichi HikimaDepartment of Biochemistry and Applied Biosciences, Faculty of Agriculture, University of Miyazaki, Gakuenkibanadai-nishi 1-1, Miyazaki 889-2192, Japan.
Jagiellonian University · PLUniversity of Miyazaki · JPCentral Institute of Brackishwater Aquaculture · IN

Funding

Japan Society for the Promotion of Science KAKENHI Grant number 17H03863Narodowe Centrum Nauki UMO-2015/18/E/NZ6/00516
6 · The paper itself

Abstract

Recognition of the non-self signature of invading pathogens is a crucial step for the initiation of the innate immune mechanisms of the host. The host response to viral and bacterial infection involves sets of pattern recognition receptors (PRRs), which bind evolutionarily conserved pathogen structures, known as pathogen-associated molecular patterns (PAMPs). Recent advances in the identification of different types of PRRs in teleost fish revealed a number of cytosolic sensors for recognition of viral and bacterial nucleic acids. These are DExD/H-box RNA helicases including a group of well-characterized retinoic acid inducible gene I (RIG-I)-like receptors (RLRs) and non-RLR DExD/H-box RNA helicases (e.g., DDX1, DDX3, DHX9, DDX21, DHX36 and DDX41) both involved in recognition of viral RNAs. Another group of PRRs includes cytosolic DNA sensors (CDSs), such as cGAS and LSm14A involved in recognition of viral and intracellular bacterial dsDNAs. Moreover, dsRNA-sensing protein kinase R (PKR), which has a role in antiviral immune responses in higher vertebrates, has been identified in fish. Additionally, fish possess a novel PKR-like protein kinase containing Z-DNA binding domain, known as PKZ. Here, we review the current knowledge concerning cytosolic sensors for recognition of viral and bacterial nucleic acids in teleosts.

Indexed as

Biosensing TechniquesAnimalsBacteriaCytosolDNA, BacterialDNA-Binding ProteinsDNA VirusesFishesNucleic AcidsRNA, BacterialRNA Recognition Motif ProteinsRNA, ViralVirusesDNA, BacterialDNA-Binding ProteinsNucleic AcidsRNA, BacterialRNA Recognition Motif ProteinsRNA, ViralcGASDExD/H-box RNA helicasesLSm14APKZRIG-IRLR

Identifiers

PMID33023222
PMCPMC7582293
OpenAlexW3091320098

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.