Evidence map›Paper›PMID 33021900›Full record

ArticleOmics : a journal of integrative biology2020

The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications.

Victoria Nembaware, Gaston K Mazandu, Jade Hotchkiss, Jean-Michel Safari Serufuri, Jill Kent, Andre Pascal Kengne, Kofi Anie, Nchangwi Syntia Munung, Daima Bukini, Valentina Josiane Ngo Bitoungui and 27 more

Open access · hybridAbstract readConference Proceedings
In one paragraph

Article in Omics : a journal of integrative biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors at 18 institutions in 13 countries.

Victoria NembawareDivision of Human Genetics, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa.
Gaston K MazanduDivision of Human Genetics, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa.
Jade HotchkissDivision of Human Genetics, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa.
Jean-Michel Safari SerufuriDivision of Human Genetics, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa.
Jill KentSickle Cell Programme, Muhimbili University of Health and Allied Sciences (MUHAS), Dar es Salaam, Tanzania.
Andre Pascal KengneNon-Communicable Diseases Research Unit, South African Medical Research Council, Cape Town, South Africa.
Kofi AnieLondon North West University Healthcare NHS Trust and Imperial College London, London, UK.
Nchangwi Syntia MunungDivision of Human Genetics, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa.
Daima BukiniSickle Cell Programme, Muhimbili University of Health and Allied Sciences (MUHAS), Dar es Salaam, Tanzania.
Valentina Josiane Ngo BitounguiDepartment of Microbiology, Hematology and Immunology, Faculty of Medicine and Pharmaceutical Sciences of the University of Dschang, Dschang, Cameroon.
Deogratias MunubeDepartment of Paediatric and Child Health, Makerere University/Mulago National Referral Hospital, Kampala, Uganda.
Uzima ChirwaUniversity Teaching Hospitals-Children's Hospital, University of Zambia, School of Medicine, Lusaka, Zambia.
Catherine Chunda-LiyokaUniversity Teaching Hospitals-Children's Hospital, University of Zambia, School of Medicine, Lusaka, Zambia.
Agnes JonathanSickle Cell Programme, Muhimbili University of Health and Allied Sciences (MUHAS), Dar es Salaam, Tanzania.
Miriam V Flor-ParkOnco-hematology Unit, Instituto da Criança, Hospital das Clínicas, Universidade de São Paulo, São Paulo, Brazil.
Kevin Kum EsohDepartment of Biochemistry, Faculty of Science, Jomo Kenyatta University of Agriculture and Technology, Juja, Kenya.
Mario JonasDivision of Human Genetics, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa.
Khuthala MnikaDivision of Human Genetics, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa.
Chandré OosterwykDivision of Human Genetics, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa.
Upendo MasamuSickle Cell Programme, Muhimbili University of Health and Allied Sciences (MUHAS), Dar es Salaam, Tanzania.
Jack MorriceDivision of Human Genetics, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa.
Annette UwinezaUniversity of Rwanda, School of Medicine and Pharmacy, Kigali, Rwanda.
Arthemon NguwenezaDivision of Human Genetics, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa.
Kambe BandaDivision of Human Genetics, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa.
Isaac NyanorKumasi Centre for Sickle Cell Disease, Komfo Anokye Teaching Hospital, Accra, Ghana.
David Nana AdjeiSickle Cell Disease Genomics Network of Africa (SickleGenAfrica), University of Ghana, Accra, Ghana.
Nathan Edward SiebuSickle Cell Disease Genomics Network of Africa (SickleGenAfrica), University of Ghana, Accra, Ghana.
Malula NkanyemkaSickle Cell Programme, Muhimbili University of Health and Allied Sciences (MUHAS), Dar es Salaam, Tanzania.
Patience KuonaUniversity of Zimbabwe College of Health Sciences, Harare, Zimbabwe.
Bamidele O TayoDepartment of Public Health Sciences, Parkinson School of Health Sciences and Public Health, Loyola University Chicago, Maywood, Illinois, USA.
Andrew CampbellDivision of Hematology, Center for Cancer and Blood Disorders, Children's National Medical Center, George Washington University School of Medicine and Health Sciences, Washington, DC, USA.
Assaf P OronMaternal, Newborn and Child Health, Institute for Disease Modeling, Bellevue, Washington, USA.
Obiageli E NnoduCentre of Excellence for Sickle Cell Disease Research and Training, University of Abuja, Abuja, Nigeria.
Vivian PainstilDepartment of Child Health, Komfo Anokye Teaching Hospital, Kumasi, Ghana.
Julie MakaniSickle Cell Programme, Muhimbili University of Health and Allied Sciences (MUHAS), Dar es Salaam, Tanzania.
Nicola MulderComputational Biology Division, Faculty of Health Sciences, Cape Town, South Africa.
Ambroise WonkamDivision of Human Genetics, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa.
University of Cape Town · ZAMuhimbili University of Health and Allied Sciences · TZIndepth Network · GHKomfo Anokye Teaching Hospital · GHUniversity of Zambia · ZMCenter for Cancer and Blood Disorders · USChicago Department of Public Health · USHospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo · BRImperial College Healthcare NHS Trust · GBInstitute for Disease Modeling · USJomo Kenyatta University of Agriculture and Technology · KEMulago Hospital · UGSouth African Medical Research Council · ZAUniversité de Dschang · CMUniversity of Abuja · NGUniversity of Rwanda · RWUniversity of Zimbabwe · ZWWestern Cape Department of Health · ZA

Funding

H3ABioNet: informatics solutions for H3AfricaU24HG006941 · NHGRI · UNIVERSITY OF CAPE TOWN · PI MULDER, NICOLA · 2017 to 2021
$12.9M
Sickle Africa Data Coordinating CenterU24HL135600 · NHLBI · UNIVERSITY OF CAPE TOWN · PI MULDER, NICOLA, WONKAM, AMBROISE · 2017 to 2025
$8.6M
NHGRI NIH HHS U24 HG006941NHLBI NIH HHS U24 HL135600
6 · The paper itself

Abstract

Sickle cell disease (SCD) is one of the most common blood disorders impacting planetary health. Over 300,000 newborns are diagnosed with SCD each year globally, with an increasing trend. The sickle cell disease ontology (SCDO) is the most comprehensive multidisciplinary SCD knowledge portal. The SCDO was collaboratively developed by the SCDO working group, which includes experts in SCD and data standards from across the globe. This expert review presents highlights and lessons learned from the fourth SCDO workshop that marked the beginning of applications toward planetary health impact, and with an eye to empower and cultivate multisite SCD collaborative research. The workshop was organized by the Sickle Africa Data Coordinating Center (SADaCC) and attended by 44 participants from 14 countries, with 2 participants connecting remotely. Notably, from the standpoint of democratizing and innovating scientific meeting design, an SCD patient advocate also presented at the workshop, giving a broader real-life perspective on patients' aspirations, needs, and challenges. A major component of the workshop was new approaches to harness SCDO to harmonize data elements used by different studies. This was facilitated by a web-based platform onto which participants uploaded data elements from previous or ongoing SCD-relevant research studies before the workshop, making multisite collaborative research studies based on existing SCD data possible, including multisite cohort, SCD global clinical trials, and SCD community engagement approaches. Trainees presented proposals for systematic literature reviews in key SCD research areas. This expert review emphasizes potential and prospects of SCDO-enabled data standards and harmonization to facilitate large-scale global SCD collaborative initiatives. As the fields of public and global health continue to broaden toward planetary health, the SCDO is well poised to play a prominent role to decipher SCD pathophysiology further, and co-design diagnostics and therapeutics innovation in the field.

Indexed as

Anemia, Sickle CellAnimalsDisease ManagementDisease SusceptibilityHumansResearchdata harmonizationGlobal Clinical Trial Designplanetary healthSickle Africa Data Coordinating Centersickle cell diseasesickle cell disease ontologySickleInAfrica

Identifiers

PMID33021900
PMCPMC7549008
OpenAlexW3092259555

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.