Evidence map›Paper›PMID 33021676›Full record

ArticleNucleic acids research2020

HIV-1 infection activates endogenous retroviral promoters regulating antiviral gene expression.

Smitha Srinivasachar Badarinarayan, Irina Shcherbakova, Simon Langer, Lennart Koepke, Andrea Preising, Dominik Hotter, Frank Kirchhoff, Konstantin M J Sparrer, Gunnar Schotta, Daniel Sauter

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed, 1 pooled it
12.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 1 synthesis or guideline pooled it, 98 citations in OpenAlex.

  1. Pooled it
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  3. PervasivebioRxiv : the preprint server for biology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Smitha Srinivasachar BadarinarayanInstitute of Molecular Virology, Ulm University Medical Center, Ulm 89081, Germany.
Irina ShcherbakovaMolecular Biology Division, Biomedical Center, Ludwig-Maximilians-University Munich, Planegg-Martinsried 82152, Germany.
Simon LangerInstitute of Molecular Virology, Ulm University Medical Center, Ulm 89081, Germany.
Lennart KoepkeInstitute of Molecular Virology, Ulm University Medical Center, Ulm 89081, Germany.
Andrea PreisingInstitute of Molecular Virology, Ulm University Medical Center, Ulm 89081, Germany.
Dominik HotterInstitute of Molecular Virology, Ulm University Medical Center, Ulm 89081, Germany.
Frank KirchhoffInstitute of Molecular Virology, Ulm University Medical Center, Ulm 89081, Germany.
Konstantin M J SparrerInstitute of Molecular Virology, Ulm University Medical Center, Ulm 89081, Germany.
Gunnar SchottaMolecular Biology Division, Biomedical Center, Ludwig-Maximilians-University Munich, Planegg-Martinsried 82152, Germany.
Daniel SauterInstitute of Molecular Virology, Ulm University Medical Center, Ulm 89081, Germany.
Universität Ulm · DELudwig-Maximilians-Universität München · DESanford Burnham Prebys Medical Discovery Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although endogenous retroviruses (ERVs) are known to harbor cis-regulatory elements, their role in modulating cellular immune responses remains poorly understood. Using an RNA-seq approach, we show that several members of the ERV9 lineage, particularly LTR12C elements, are activated upon HIV-1 infection of primary CD4+ T cells. Intriguingly, HIV-1-induced ERVs harboring transcription start sites are primarily found in the vicinity of immunity genes. For example, HIV-1 infection activates LTR12C elements upstream of the interferon-inducible genes GBP2 and GBP5 that encode for broad-spectrum antiviral factors. Reporter assays demonstrated that these LTR12C elements drive gene expression in primary CD4+ T cells. In line with this, HIV-1 infection triggered the expression of a unique GBP2 transcript variant by activating a cryptic transcription start site within LTR12C. Furthermore, stimulation with HIV-1-induced cytokines increased GBP2 and GBP5 expression in human cells, but not in macaque cells that naturally lack the GBP5 gene and the LTR12C element upstream of GBP2. Finally, our findings suggest that GBP2 and GBP5 have already been active against ancient viral pathogens as they suppress the maturation of the extinct retrovirus HERV-K (HML-2). In summary, our findings uncover how human cells can exploit remnants of once-infectious retroviruses to regulate antiviral gene expression.

Indexed as

Promoter Regions, GeneticAnimalsCD4-Positive T-LymphocytesEndogenous RetrovirusesGene Expression RegulationGTP-Binding ProteinsHEK293 CellsHIV-1HIV InfectionsHumansMacaca mulattaT-Lymphocyte SubsetsGBP2 protein, humanGBP5 protein, humanGTP-Binding Proteins

Identifiers

PMID33021676
PMCPMC7641743
OpenAlexW3089588814

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.