Evidence map›Paper›PMID 33020655›Full record

ArticleNature methods2020

An efficient KRAB domain for CRISPRi applications in human cells.

Nader Alerasool, Dmitri Segal, Hunsang Lee, Mikko Taipale

Abstract read
PubMed Publisher
In one paragraph

Article in Nature methods, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 183 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
183citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

183 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. The landscape and trajectory of global CRISPR therapeutics.Molecular therapy. Nucleic acids · 2026
    Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Embedded CRISPRi Enhances Gene-Silencing Efficiency in Drosophila.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  14. Article
  15. Clinical translation of epigenome editing technologies.Current opinion in biomedical engineering · 2026
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

123 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Nader AlerasoolDonnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, ON, Canada.
Dmitri SegalDonnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, ON, Canada.
Hunsang LeeDonnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, ON, Canada.
Mikko TaipaleDonnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, ON, Canada. mikko.taipale@utoronto.ca.ORCID http://orcid.org/0000-0003-3811-1761

Funding

CIHR
6 · The paper itself

Abstract

Clustered regularly interspaced short palindromic repeat interference (CRISPRi), based on the fusion of inactive Cas9 (dCas9) to the Krüppel-associated box (KRAB) repressor, is a powerful platform for silencing gene expression. However, it suffers from incomplete silencing of target genes. We assayed 57 KRAB domains for their repressive potency and identified the ZIM3 KRAB domain as an exceptionally potent repressor. We establish that ZIM3 KRAB-dCas9 fusion silences gene expression more efficiently than existing platforms.

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsCatalytic DomainCRISPR-Associated Protein 9CRISPR-Cas SystemsGenes, ReporterHEK293 CellsHumansK562 CellsKruppel-Like Transcription FactorsPromoter Regions, GeneticRepressor ProteinsRNA, Guide, CRISPR-Cas SystemsTranscription, GeneticCRISPR-Associated Protein 9Kruppel-Like Transcription FactorsRepressor ProteinsRNA, Guide, CRISPR-Cas Systems

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.