Evidence map›Paper›PMID 33020502›Full record

ArticleScientific reports2020

SARS-CoV-2 spike protein predicted to form complexes with host receptor protein orthologues from a broad range of mammals.

S D Lam, N Bordin, V P Waman, H M Scholes, P Ashford, N Sen, L van Dorp, C Rauer, N L Dawson, C S M Pang and 7 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 1 synthesis or guideline pooled it, 122 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. The effect of ACE2 receptor, IFN-γ, and TNF-α polymorphisms on the severity and prognosis of the disease in SARS-CoV-2 infection.Journal of investigative medicine : the official publication of the American Federation for Clinical Research · 2023
    Article
  11. Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. COVID-19 infection and thyroid function.Endocrine and metabolic science · 2022
    Article
  19. Thyrotoxicosis occurrence in SARS-CoV-2 infection: A case report.Annals of medicine and surgery (2012) · 2022
    Article
  20. Article

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 3 countries.

S D Lam *Department of Applied Physics, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600, Bangi, Selangor, Malaysia.
N Bordin *Institute of Structural and Molecular Biology, University College London, London, WC1E 6BT, UK.
V P WamanInstitute of Structural and Molecular Biology, University College London, London, WC1E 6BT, UK.
H M ScholesInstitute of Structural and Molecular Biology, University College London, London, WC1E 6BT, UK.
P AshfordInstitute of Structural and Molecular Biology, University College London, London, WC1E 6BT, UK.
N SenInstitute of Structural and Molecular Biology, University College London, London, WC1E 6BT, UK.
L van DorpUCL Genetics Institute, University College London, London, WC1E 6BT, UK.
C RauerInstitute of Structural and Molecular Biology, University College London, London, WC1E 6BT, UK.
N L DawsonInstitute of Structural and Molecular Biology, University College London, London, WC1E 6BT, UK.
C S M PangInstitute of Structural and Molecular Biology, University College London, London, WC1E 6BT, UK.
M AbbasianInstitute of Structural and Molecular Biology, University College London, London, WC1E 6BT, UK.
I SillitoeInstitute of Structural and Molecular Biology, University College London, London, WC1E 6BT, UK.
S J L EdwardsDepartment of Science and Technology Studies, University College London, London, WC1E 6BT, UK.
F FraternaliRandall Division of Cell and Molecular Biophysics, Guy's Campus, New Hunt's House, King's College London, London, SE1 1UL, UK.
J G LeesDepartment of Biological and Medical Sciences, Faculty of Health and Life Sciences, Oxford Brookes University, Oxford, OX3 OBP, UK.
J M SantiniInstitute of Structural and Molecular Biology, University College London, London, WC1E 6BT, UK.
C A OrengoInstitute of Structural and Molecular Biology, University College London, London, WC1E 6BT, UK. c.orengo@ucl.ac.uk.
Institute of Structural and Molecular Biology · GBUniversity College London · GBKing's College London · GBOxford Brookes University · GB

Funding

Biotechnology and Biological Sciences Research Council BB/H018409/1Biotechnology and Biological Sciences Research Council BB/R009597/1Biotechnology and Biological Sciences Research Council BB/R01356X/1Biotechnology and Biological Sciences Research Council BB/R014892/1Biotechnology and Biological Sciences Research Council BB/S016007/1Biotechnology and Biological Sciences Research Council BB/S020039/1Biotechnology and Biological Sciences Research Council BB/S020144/1Biotechnology and Biological Sciences Research Council BB/T002735/1British Heart Foundation NH/12/2/29427Medical Research Council MR/L01257X/1Medical Research Council MR/P007597/1Wellcome TrustWellcome Trust 104960/Z/14/ZWellcome Trust 203780/Z/16/A
6 · The paper itself

Abstract

SARS-CoV-2 has a zoonotic origin and was transmitted to humans via an undetermined intermediate host, leading to infections in humans and other mammals. To enter host cells, the viral spike protein (S-protein) binds to its receptor, ACE2, and is then processed by TMPRSS2. Whilst receptor binding contributes to the viral host range, S-protein:ACE2 complexes from other animals have not been investigated widely. To predict infection risks, we modelled S-protein:ACE2 complexes from 215 vertebrate species, calculated changes in the energy of the complex caused by mutations in each species, relative to human ACE2, and correlated these changes with COVID-19 infection data. We also analysed structural interactions to better understand the key residues contributing to affinity. We predict that mutations are more detrimental in ACE2 than TMPRSS2. Finally, we demonstrate phylogenetically that human SARS-CoV-2 strains have been isolated in animals. Our results suggest that SARS-CoV-2 can infect a broad range of mammals, but few fish, birds or reptiles. Susceptible animals could serve as reservoirs of the virus, necessitating careful ongoing animal management and surveillance.

Indexed as

PhylogenyAngiotensin-Converting Enzyme 2AnimalsBetacoronavirusHumansMammalsMolecular Docking SimulationMutationPeptidyl-Dipeptidase AProtein BindingSARS-CoV-2Spike Glycoprotein, CoronavirusACE2 protein, humanAngiotensin-Converting Enzyme 2Peptidyl-Dipeptidase ASpike Glycoprotein, Coronavirusspike glycoprotein, SARS-CoV

Identifiers

PMID33020502
PMCPMC7536205
OpenAlexW3089490646

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.