Evidence map›Paper›PMID 33020276›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Genomic diversity generated by a transposable element burst in a rice recombinant inbred population.

Jinfeng Chen, Lu Lu, Sofia M C Robb, Matthew Collin, Yutaka Okumoto, Jason E Stajich, Susan R Wessler

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

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  13. Phased secondary small interfering RNAs inNAR genomics and bioinformatics · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jinfeng ChenDepartment of Botany and Plant Sciences, University of California, Riverside, CA 92521.ORCID 0000-0002-5628-6322
Lu LuDepartment of Botany and Plant Sciences, University of California, Riverside, CA 92521.
Sofia M C RobbDepartment of Botany and Plant Sciences, University of California, Riverside, CA 92521.
Matthew CollinDepartment of Botany and Plant Sciences, University of California, Riverside, CA 92521.
Yutaka OkumotoGraduate School of Agriculture, Kyoto University, 606-8502 Kyoto, Japan.
Jason E StajichDepartment of Microbiology and Plant Pathology, University of California, Riverside, CA 92521.ORCID 0000-0002-7591-0020
Susan R WesslerDepartment of Botany and Plant Sciences, University of California, Riverside, CA 92521; susan.wessler@ucr.edu.ORCID 0000-0001-6823-5541

Funding

Acquisition of a Scalable Storage Cluster for Data Intensive NIH ResearchS10OD016290 · OD · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI GIRKE, THOMAS · 2014 to 2014
$593k
NIH HHS S10 OD016290
6 · The paper itself

Abstract

Genomes of all characterized higher eukaryotes harbor examples of transposable element (TE) bursts-the rapid amplification of TE copies throughout a genome. Despite their prevalence, understanding how bursts diversify genomes requires the characterization of actively transposing TEs before insertion sites and structural rearrangements have been obscured by selection acting over evolutionary time. In this study, rice recombinant inbred lines (RILs), generated by crossing a bursting accession and the reference Nipponbare accession, were exploited to characterize the spread of the very active

Indexed as

Base SequenceDNA Transposable ElementsGenetic VariationGenome, PlantGenomicsOryzaTransposasesDNA Transposable ElementsTransposasesactive transposonexcisionmPingrecombinant inbred linesstructural variation

Identifiers

PMID33020276
PMCPMC7584900

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.