Evidence map›Paper›PMID 33020265›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Dynamic evolution of great ape Y chromosomes.

Monika Cechova, Rahulsimham Vegesna, Marta Tomaszkiewicz, Robert S Harris, Di Chen, Samarth Rangavittal, Paul Medvedev, Kateryna D Makova

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 54 citations in OpenAlex.

  1. Review
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  6. On the resolution of sexual conflict over shared traits.Proceedings. Biological sciences · 2024
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  8. ESKEMAP: exact sketch-based read mapping.Algorithms for molecular biology : AMB · 2024
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  13. Exact Sketch-Based Read Mapping.Algorithms in bioinformatics : ... International Workshop, WABI ..., proceedings. WABI (Workshop) · 2023
    Article
  14. Article
  15. Article
  16. The evolution of early hominin food production and sharing.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  17. Article
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  19. Animals : an open access journal from MDPI · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Monika CechovaDepartment of Biology, Penn State University, University Park, PA 16802.ORCID 0000-0002-7420-2663
Rahulsimham VegesnaDepartment of Biology, Penn State University, University Park, PA 16802.ORCID 0000-0001-9829-9765
Marta TomaszkiewiczDepartment of Biology, Penn State University, University Park, PA 16802.ORCID 0000-0003-1523-200X
Robert S HarrisDepartment of Biology, Penn State University, University Park, PA 16802.ORCID 0000-0001-5464-6892
Di ChenDepartment of Biology, Penn State University, University Park, PA 16802.
Samarth RangavittalDepartment of Biology, Penn State University, University Park, PA 16802.
Paul MedvedevDepartment of Computer Science and Engineering, Penn State University, University Park, PA 16802; pzm11@psu.edu kdm16@psu.edu.
Kateryna D MakovaDepartment of Biology, Penn State University, University Park, PA 16802; pzm11@psu.edu kdm16@psu.edu.ORCID 0000-0002-6212-9526
Pennsylvania State University · US

Funding

Computation, Bioinformatics, and Statistics (CBIOS) Training ProgramT32GM102057 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI CHIAROMONTE, FRANCESCA, GIRIRAJAN, SANTHOSH · 2013 to 2022
$2.7M
Y Chromosome EvolutionR01GM130691 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI MAKOVA, KATERYNA · 2019 to 2022
$1.7M
NIGMS NIH HHS R01 GM130691NIGMS NIH HHS T32 GM102057
6 · The paper itself

Abstract

The mammalian male-specific Y chromosome plays a critical role in sex determination and male fertility. However, because of its repetitive and haploid nature, it is frequently absent from genome assemblies and remains enigmatic. The Y chromosomes of great apes represent a particular puzzle: their gene content is more similar between human and gorilla than between human and chimpanzee, even though human and chimpanzee share a more recent common ancestor. To solve this puzzle, here we constructed a dataset including Ys from all extant great ape genera. We generated assemblies of bonobo and orangutan Ys from short and long sequencing reads and aligned them with the publicly available human, chimpanzee, and gorilla Y assemblies. Analyzing this dataset, we found that the genus

Indexed as

AnimalsBiological EvolutionEvolution, MolecularGene ConversionGorilla gorillaHominidaeHumansPan paniscusPan troglodytesPongoSequence Analysis, DNAY Chromosomegene content evolutionpalindromessex chromosomes

Identifiers

PMID33020265
PMCPMC7585023
OpenAlexW3090950993

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.