Evidence map›Paper›PMID 33019770›Full record

ArticleInternational journal of molecular sciences2020

Structural Diversity and Dynamics of Human Three-Finger Proteins Acting on Nicotinic Acetylcholine Receptors.

Alexander S Paramonov, Milita V Kocharovskaya, Andrey V Tsarev, Dmitrii S Kulbatskii, Eugene V Loktyushov, Mikhail A Shulepko, Mikhail P Kirpichnikov, Ekaterina N Lyukmanova, Zakhar O Shenkarev

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Ly6/uPAR Protein fromMarine drugs · 2025
    Article
  3. Therapeutic Promise and Biotechnological Prospects ofInternational journal of molecular sciences · 2025
    Review
  4. Article
  5. Article
  6. Article
  7. A novel anxiety-associated SNP identified inFrontiers in behavioral neuroscience · 2024
    Article
  8. Article
  9. Review
  10. Orientational Preferences of GPI-Anchored Ly6/uPAR Proteins.International journal of molecular sciences · 2022
    Article
  11. Article
  12. Hemocyte Clusters Defined by scRNA-Seq inFrontiers in immunology · 2022
    Article
  13. The Physical Chemistry and Chemical Physics (PCCP) Section of theInternational journal of molecular sciences · 2021
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Alexander S ParamonovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 119997 Moscow, Russia.ORCID 0000-0003-3614-560X
Milita V KocharovskayaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 119997 Moscow, Russia.
Andrey V TsarevShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 119997 Moscow, Russia.ORCID 0000-0001-5085-749X
Dmitrii S KulbatskiiShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 119997 Moscow, Russia.
Eugene V LoktyushovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 119997 Moscow, Russia.
Mikhail A ShulepkoShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 119997 Moscow, Russia.
Mikhail P KirpichnikovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 119997 Moscow, Russia.
Ekaterina N LyukmanovaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 119997 Moscow, Russia.
Zakhar O ShenkarevShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 119997 Moscow, Russia.ORCID 0000-0003-1383-3522
Institute of Bioorganic Chemistry · RUMoscow Institute of Physics and Technology · RULomonosov Moscow State University · RU

Funding

Russian Foundation for Basic Research 20-04-00830Russian Science Foundation 19-74-20176
6 · The paper itself

Abstract

Ly-6/uPAR or three-finger proteins (TFPs) contain a disulfide-stabilized β-structural core and three protruding loops (fingers). In mammals, TFPs have been found in epithelium and the nervous, endocrine, reproductive, and immune systems. Here, using heteronuclear NMR, we determined the three-dimensional (3D) structure and backbone dynamics of the epithelial secreted protein SLURP-1 and soluble domains of GPI-anchored TFPs from the brain (Lynx2, Lypd6, Lypd6b) acting on nicotinic acetylcholine receptors (nAChRs). Results were compared with the data about human TFPs Lynx1 and SLURP-2 and snake α-neurotoxins WTX and NTII. Two different topologies of the β-structure were revealed: one large antiparallel β-sheet in Lypd6 and Lypd6b, and two β-sheets in other proteins. α-Helical segments were found in the loops I/III of Lynx2, Lypd6, and Lypd6b. Differences in the surface distribution of charged and hydrophobic groups indicated significant differences in a mode of TFPs/nAChR interactions. TFPs showed significant conformational plasticity: the loops were highly mobile at picosecond-nanosecond timescale, while the β-structural regions demonstrated microsecond-millisecond motions. SLURP-1 had the largest plasticity and characterized by the unordered loops II/III and

Indexed as

Adaptor Proteins, Signal TransducingAmino Acid SequenceAntigens, LyBinding SitesCloning, MolecularElapid VenomsEscherichia coliGene ExpressionGenetic VectorsGPI-Linked ProteinsHumansHydrophobic and Hydrophilic InteractionsModels, MolecularNeuropeptidesNuclear Magnetic Resonance, BiomolecularProtein BindingAdaptor Proteins, Signal TransducingAntigens, LyElapid VenomsGPI-Linked ProteinsLYNX1 protein, humanLYPD6B protein, humanLYPD6 protein, humanNeuropeptidesProtein IsoformsReceptors, NicotinicRecombinant ProteinsSLURP1 protein, humanUrokinase-Type Plasminogen ActivatorWeak toxin, Naja15N-relaxationbackbone dynamicsLy-6/uPARnicotinic acetylcholine receptorsNMR spectroscopythree-finger proteins

Identifiers

PMID33019770
PMCPMC7582953
OpenAlexW3091482139

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.