Evidence map›Paper›PMID 33017877›Full record

ArticleGenomics & informatics2020

Organizing an in-class hackathon to correct PDF-to-text conversion errors of Genomics & Informatics 1.0.

Sunho Kim, Royoung Kim, Hee-Jo Nam, Ryeo-Gyeong Kim, Enjin Ko, Han-Su Kim, Jihye Shin, Daeun Cho, Yurhee Jin, Soyeon Bae and 35 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Genomics & informatics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

45 authors.

Sunho KimBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Royoung KimBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Hee-Jo NamBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Ryeo-Gyeong KimBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Enjin KoBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Han-Su KimBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Jihye ShinBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Daeun ChoBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Yurhee JinBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Soyeon BaeBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Ye Won JoBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
San Ah JeongBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Yena KimBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Seoyeon AhnBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Bomi JangBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Jiheyon SeongBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Yujin LeeBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Si Eun SeoBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Yujin KimBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Ha-Jeong KimBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Hyeji KimBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Hye-Lynn SungBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Hyoyoung LhoBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Jaywon KooBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Jion ChuBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Juwon LimBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Youngju KimBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Kyungyeon LeeBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Yuri LimBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Meongeun KimBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Seonjeong HwangBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Shinhye HanBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Sohyeun BaeBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Sua KimBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Suhyeon YooBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Yeonjeong SeoBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Yerim ShinBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Yonsoo KimBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
You-Jung KoBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Jihee BaekBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Hyejin HyunBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Hyemin ChoiBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Ji-Hye OhBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Da-Young KimBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Hyun-Seok ParkBioinformatics & Natural Language Processing Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This paper describes a community effort to improve earlier versions of the full-text corpus of Genomics & Informatics by semi-automatically detecting and correcting PDF-to-text conversion errors and optical character recognition errors during the first hackathon of Genomics & Informatics Annotation Hackathon (GIAH) event. Extracting text from multi-column biomedical documents such as Genomics & Informatics is known to be notoriously difficult. The hackathon was piloted as part of a coding competition of the ELTEC College of Engineering at Ewha Womans University in order to enable researchers and students to create or annotate their own versions of the Genomics & Informatics corpus, to gain and create knowledge about corpus linguistics, and simultaneously to acquire tangible and transferable skills. The proposed projects during the hackathon harness an internal database containing different versions of the corpus and annotations.

Indexed as

biomedical text miningcorpustext analytics

Identifiers

PMID33017877
PMCPMC7560450

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.