ArticleThe plant genome2020
Genome-wide association study of multiple yield traits in a diversity panel of polyploid sugarcane (Saccharum spp.).
Article in The plant genome, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed, 53 citations in OpenAlex.
- Phenotype-genotype association for the identification of resistance to stem borers (Frontiers in plant science · 2026Article
- Multiomic insights into sucrose accumulation in sugarcane.Plant molecular biology · 2025Article
- Identification of new genetic resources for drought tolerance-related traits from the worldFrontiers in plant science · 2025Article
- Genetic variation and preliminary marker-trait associations for cane quality traits in a diverse world collection of sugarcane (Frontiers in plant science · 2025Article
- Genetic association analysis in sugarcane (Saccharum spp.) for sucrose accumulation in humid environments in Colombia.BMC plant biology · 2024Article
- Dissecting the genomic regions of selection on the X chromosome in different cattle breeds.3 Biotech · 2024Article
- A Large-Scale Candidate-Gene Association Mapping for Drought Tolerance and Agronomic Traits in Sugarcane.International journal of molecular sciences · 2023Article
- Genetic diversity, population structure, and genome-wide association analysis of ginkgo cultivars.Horticulture research · 2023Article
- Evaluation of a Sugarcane (Plants (Basel, Switzerland) · 2023Article
- A SNP variation in the Sucrose synthase (PeerJ · 2023Article
- Review
- A first look at the ability to use genomic prediction for improving the ratooning ability of sugarcane.Frontiers in plant science · 2023Article
- Assessing the genetic integrity of sugarcane germplasm in the USDA-ARS National Plant Germplasm System collection using single-dose SNP markers.Frontiers in plant science · 2023Article
- Identification of potential MTAs and candidate genes for juice quality- and yield-related traits in Saccharum clones: a genome-wide association and comparative genomic study.Molecular genetics and genomics : MGG · 2022Article
- Resequencing and genome-wide association studies of autotetraploid potato.Molecular horticulture · 2022Article
- Combining genomic selection with genome-wide association analysis identified a large-effect QTL and improved selection for red rot resistance in sugarcane.Frontiers in plant science · 2022Article
- Phenotypic and molecular analyses in diploid and tetraploid genotypes ofFrontiers in plant science · 2022Article
- Genome-wide approaches for the identification of markers and genes associated with sugarcane yellow leaf virus resistance.Scientific reports · 2021Article
- Global transcriptome changes of elongating internode of sugarcane in response to mepiquat chloride.BMC genomics · 2021Article
- Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Sugarcane (Saccharum spp.) is an important economic crop, contributing up to 80% of sugar and approximately 60% of biofuel globally. To meet the increased demand for sugar and biofuel supplies, it is critical to breed sugarcane cultivars with robust performance in yield traits. Therefore, dissection of causal DNA sequence variants is of great importance, as it provides genetic resources and fundamental information for crop improvement. In this study, we analyzed nine yield traits in a sugarcane diversity panel consisting of 308 accessions primarily selected from the World Collection of Sugarcane and Related Grasses. By genotyping the diversity panel via target enrichment sequencing, we identified a large number of sequence variants. Genome-wide association studies between the markers and traits were conducted, taking dosages and gene actions into consideration. In total, 217 nonredundant markers and 225 candidate genes were identified to be significantly associated with the yield traits, which can serve as a comprehensive genetic resource database for future gene identification, characterization, and selection for sugarcane improvement. We further investigated runs of homozygosity (ROH) in the sugarcane diversity panel. We characterized 282 ROHs and found that the occurrence of ROHs in the genome were nonrandom and probably under selection. The ROHs were associated with total weight and dry weight, and high ROHs resulted in a decrease in the two traits. This study suggests that genomic inbreeding has led to negative impacts on sugarcane yield.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.