Evidence map›Paper›PMID 33016633›Full record

ArticleThe plant genome2020

Transposon activation is a major driver in the genome evolution of cultivated olive trees (Olea europaea L.).

Jaime Jiménez-Ruiz, Jorge A Ramírez-Tejero, Noé Fernández-Pozo, María de la O Leyva-Pérez, Haidong Yan, Raúl de la Rosa, Angjelina Belaj, Eva Montes, Mª Oliva Rodríguez-Ariza, Francisco Navarro and 5 more

Open access · goldAbstract read
In one paragraph

Article in The plant genome, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
10.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 97 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Chitinase genes in olive tree (Frontiers in plant science · 2026
    Article
  7. Genetic and Cyto-Histological Analyses inInternational journal of molecular sciences · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Genotypic Effect on Olive (Plants (Basel, Switzerland) · 2025
    Article
  12. Genetic markers of olive fruit weight selected to be used in breeding experiments.Molecular breeding : new strategies in plant improvement · 2025
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Evaluation of genetic diversity among olive trees (Frontiers in plant science · 2024
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 4 countries.

Jaime Jiménez-RuizCenter for Advanced Studies in Olive Grove and Olive Oils, Department of Experimental Biology, University. Jaén, Jaén, 23071, Spain.
Jorge A Ramírez-TejeroCenter for Advanced Studies in Olive Grove and Olive Oils, Department of Experimental Biology, University. Jaén, Jaén, 23071, Spain.ORCID 0000-0002-6551-1712
Noé Fernández-PozoPlant Cell Biology, Faculty of Biology, University of Marburg, Marburg, Germany.
María de la O Leyva-PérezCenter for Advanced Studies in Olive Grove and Olive Oils, Department of Experimental Biology, University. Jaén, Jaén, 23071, Spain.
Haidong YanSchool of Plants and Environmental Sciences, Virginia Tech, Blacksburg, VA, 24061, USA.
Raúl de la RosaCentro de Investigación y Formación Agraria de Alameda del Obispo, Instituto de Investigación y Formación Agraria y Pesquera (IFAPA), Córdoba, Spain.
Angjelina BelajCentro de Investigación y Formación Agraria de Alameda del Obispo, Instituto de Investigación y Formación Agraria y Pesquera (IFAPA), Córdoba, Spain.
Eva MontesInstituto Universitario de Investigación en Arqueología Ibérica, University. Jaén, Jaén, 23071, Spain.
Mª Oliva Rodríguez-ArizaInstituto Universitario de Investigación en Arqueología Ibérica, University. Jaén, Jaén, 23071, Spain.
Francisco NavarroCenter for Advanced Studies in Olive Grove and Olive Oils, Department of Experimental Biology, University. Jaén, Jaén, 23071, Spain.
Juan Bautista BarrosoCenter for Advanced Studies in Olive Grove and Olive Oils, Department of Experimental Biology, University. Jaén, Jaén, 23071, Spain.
Carmen R BeuzónDepartamento de Biología Celular, Genética y Fisiología, Facultad de Ciencias, Instituto de Hortofruticultura Subtropical y Mediterránea, Universidad de Málaga - Consejo Superior de Investigaciones Científicas, Málaga, Spain.
Victoriano ValpuestaDepartamento de Biología Molecular y Bioquímica, Facultad de Ciencias, Instituto de Hortofruticultura Subtropical y Mediterránea, Universidad de Málaga - Consejo Superior de Investigaciones Científicas, Málaga, Spain.
Aureliano BombarelySchool of Plants and Environmental Sciences, Virginia Tech, Blacksburg, VA, 24061, USA.
Francisco LuqueCenter for Advanced Studies in Olive Grove and Olive Oils, Department of Experimental Biology, University. Jaén, Jaén, 23071, Spain.ORCID 0000-0003-1354-3533
Universidad de Jaén · ESAndalusian Institute of Agricultural and Fisheries Research and Training · ESConsejo Superior de Investigaciones Científicas · ESPhilipps University of Marburg · DEUniversity of Milan · ITVirginia Tech · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The primary domestication of olive (Olea europaea L.) in the Levant dates back to the Neolithic period, around 6,000-5,500 BC, as some archeological remains attest. Cultivated olive trees are reproduced clonally, with sexual crosses being the sporadic events that drive the development of new varieties. In order to determine the genomic changes which have occurred in a modern olive cultivar, the genome of the Picual cultivar, one of the most popular olive varieties, was sequenced. Additional 40 cultivated and 10 wild accessions were re-sequenced to elucidate the evolution of the olive genome during the domestication process. It was found that the genome of the 'Picual' cultivar contains 79,667 gene models, of which 78,079 were protein-coding genes and 1,588 were tRNA. Population analyses support two independent events in olive domestication, including an early possible genetic bottleneck. Despite genetic bottlenecks, cultivated accessions showed a high genetic diversity driven by the activation of transposable elements (TE). A high TE gene expression was observed in presently cultivated olives, which suggests a current activity of TEs in domesticated olives. Several TEs families were expanded in the last 5,000 or 6,000 years and produced insertions near genes that may have been involved in selected traits during domestication as reproduction, photosynthesis, seed development, and oil production. Therefore, a great genetic variability has been found in cultivated olive as a result of a significant activation of TEs during the domestication process.

Indexed as

OleaDomesticationEvolution, MolecularGenomics

Identifiers

PMID33016633
PMCPMC12806974
OpenAlexW3012964617

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.