Evidence map›Paper›PMID 33016610›Full record

ArticleThe plant genome2020

Genome-based prediction of Bayesian linear and non-linear regression models for ordinal data.

Paulino Pérez-Rodríguez, Samuel Flores-Galarza, Humberto Vaquera-Huerta, David Hebert Del Valle-Paniagua, Osval A Montesinos-López, José Crossa

Open access · goldAbstract read
In one paragraph

Article in The plant genome, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 24 citations in OpenAlex.

  1. Harnessing artificial intelligence in plant breeding: innovations in digital phenotyping and breeding methodologies.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Review
  2. Article
  3. Artificial Intelligence-Assisted Breeding for Plant Disease Resistance.International journal of molecular sciences · 2025
    Review
  4. Review
  5. Article
  6. Using visual scores for genomic prediction of complex traits in breeding programs.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Paulino Pérez-RodríguezColegio de Postgraduados, CP 56230, Montecillos, Edo. de, México.ORCID 0000-0002-3202-1784
Samuel Flores-GalarzaColegio de Postgraduados, CP 56230, Montecillos, Edo. de, México.
Humberto Vaquera-HuertaColegio de Postgraduados, CP 56230, Montecillos, Edo. de, México.
David Hebert Del Valle-PaniaguaColegio de Postgraduados, CP 56230, Montecillos, Edo. de, México.
Osval A Montesinos-LópezFacultad de Telemática, Universidad de Colima, Colima, 28040, México.
José CrossaColegio de Postgraduados, CP 56230, Montecillos, Edo. de, México.ORCID 0000-0001-9429-5855
Colegio de Postgraduados · MXUniversidad de Colima · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Linear and non-linear models used in applications of genomic selection (GS) can fit different types of responses (e.g., continuous, ordinal, binary). In recent years, several genomic-enabled prediction models have been developed for predicting complex traits in genomic-assisted animal and plant breeding. These models include linear, non-linear and non-parametric models, mostly for continuous responses and less frequently for categorical responses. Several linear and non-linear models are special cases of a more general family of statistical models known as artificial neural networks, which provide better prediction ability than other models. In this paper, we propose a Bayesian Regularized Neural Network (BRNNO) for modelling ordinal data. The proposed model was fitted using a Bayesian framework; we used the data augmentation algorithm to facilitate computations. The proposed model was fitted using the Gibbs Maximum a Posteriori and Generalized EM algorithm implemented by combining code written in C and R programming languages. The new model was tested with two real maize datasets evaluated for Septoria and GLS diseases and was compared with the Bayesian Ordered Probit Model (BOPM). Results indicated that the BRNNO model performed better in terms of genomic-based prediction than the BOPM model.

Indexed as

BreedingGenomeAlgorithmsAnimalsBayes TheoremNeural Networks, Computer

Identifiers

PMID33016610
PMCPMC12807441
OpenAlexW3025282381

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.