Evidence map›Paper›PMID 33016598›Full record

ArticleThe plant genome2019

Genome-Wide Association Study of a Worldwide Collection of Wheat Genotypes Reveals Novel Quantitative Trait Loci for Leaf Rust Resistance.

Suraj Sapkota, Yuanfeng Hao, Jerry Johnson, James Buck, Meriem Aoun, Mohamed Mergoum

Open access · goldAbstract read
In one paragraph

Article in The plant genome, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 41 citations in OpenAlex.

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  16. High-resolution genome-wide association study and genomic prediction for disease resistance and cold tolerance in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Suraj SapkotaInst. of Plant Breeding, Genetics, and Genomics, Univ. of Georgia, Griffin Campus, Griffin, GA, 30223.
Yuanfeng HaoInst. of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Jerry JohnsonDep. of Crop and Soil Sciences, Univ. of Georgia, Griffin Campus, Griffin, GA, 30223.
James BuckDep. of Plant Pathology, Univ. of Georgia, Griffin Campus, Griffin, GA, 30223.
Meriem AounDep. of Plant Pathology and Plant-Microbe Biology, Cornell Univ., Ithaca, NY, 14853.
Mohamed MergoumDep. of Crop and Soil Sciences, Univ. of Georgia, Griffin Campus, Griffin, GA, 30223.
University of Georgia · USCornell University · USInstitute of Crop Sciences · CNSouthern Crescent Technical College · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

core ideasThe emergence of new virulent Puccinia triticina races requires a continuous search for novel sources of resistance to combat leaf rust (LR) disease Twenty-two wheat genotypes resistant to four P. triticina races were identified in this study A genome-wide association study detected 11 quantitative trait loci for LR resistance; five of them were detected on genomic regions where no LR resistant genes have been detected. Wheat (Triticum aestivum L.) production worldwide is being challenged by several biotic and abiotic factors. Leaf rust (LR), caused by Puccinia triticina, is a major biotic constraint of wheat production worldwide. Genetic resistance is the most efficient and cost-effective way to control LR. Seventy-nine LR resistance genes have been identified to date but the frequent emergence of new virulent P. triticina races every year demands a constant search for new sources of resistance with novel quantitative trait loci (QTL) or genes. The objectives of this study were to identify putative novel sources of effective resistance against the current prevalent races of P. triticina in the southeast United States and to map genomic loci associated with LR resistance via a genome-wide association study (GWAS) approach. Evaluation of 331 diverse wheat genotypes against four prevalent P. triticina races (MFGKG, MBTNB, MCTNB, and TCRKG) revealed that the majority of the genotypes were susceptible and only 22 genotypes (6.6%) were resistant to all four P. triticina races. The GWAS detected 11 QTL on nine chromosomes for LR resistance. Of these, six QTL were identified in the vicinity of known genes or QTL; therefore, more studies are warranted to determine their relationship. Five QTL (QLr.uga-1AL, QLr.uga-4AS, QLu.uga-5AS, QLr.uga-5AL, and QLr.uga-7AS) were identified on genomic regions where no LR resistance genes have been identified in wheat, representing potential novel loci for LR resistance. The highly resistant wheat genotypes and novel QTL reported in this study could be used in breeding programs to improve LR resistance.

Indexed as

Quantitative Trait LociDisease ResistanceGenome-Wide Association StudyGenotypeHumansPlant DiseasesTriticum

Identifiers

PMID33016598
PMCPMC12809919
OpenAlexW2990244346

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.