Evidence map›Paper›PMID 33015999›Full record

ArticleFEBS open bio2020

TYROBP is a potential prognostic biomarker of clear cell renal cell carcinoma.

Ping Wu, Tingting Xiang, Jing Wang, Run Lv, Guangzhen Wu

Open access · goldAbstract read
In one paragraph

Article in FEBS open bio, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.3field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 24 citations in OpenAlex.

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  18. Classification of Osteosarcoma Based on Immunogenomic Profiling.Frontiers in cell and developmental biology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Ping WuDepartment of Anesthesiology, The First Affiliated Hospital of Dalian Medical University, China.
Tingting XiangDepartment of Rehabilitation, Liguang Rehabilitation Hospital of Dalian Development Zone, China.
Jing WangDepartment of Neurobiology, Harbin Medical University, China.
Run LvAnesthesiology Department, Dalian Medical University, China.
Guangzhen WuDepartment of Urology, The First Affiliated Hospital of Dalian Medical University, China.ORCID 0000-0002-2300-8465
Dalian Medical University · CNGuangzhou Development Zone Hospital · CNHarbin Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Clear cell renal cell carcinoma (ccRCC) exhibits high recurrence and metastasis rates. Although target therapy has significantly improved the prognosis of some patients with ccRCC, the median survival rate remains poor. Thus, there remains a need for the identification of novel potential targets for diagnosis and therapy. Here, we screened differentially expressed genes between ccRCC and normal tissues through analyzing The Cancer Genome Atlas database. We identified 55 up-regulated and 67 down-regulated genes associated with poor prognosis. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway analysis revealed that these genes were associated with glycometabolic process, complement and coagulation cascades. In addition, the eight down-regulated genes (HRG, FABP1, ALDOB, PCK1, HAO2, CASR, PLG, and HMGCS2) and two up-regulated genes (SERPINE1 and TYROBP) were filtered out. Finally, TYROBP was selected through repeated verification of various databases. High expression of TYROBP is associated with low survival rate in ccRCC, is closely related to immune cell infiltration and is coexpressed with Programmed cell death protein-1(PD-1) and Cytotoxic T lymphocyte-associated antigen-4(CTLA-4). In conclusion, TYROBP may have potential for diagnosis and treatment of ccRCC.

Indexed as

Adaptor Proteins, Signal TransducingBiomarkers, TumorCarcinoma, Renal CellHumansKidney NeoplasmsMembrane ProteinsPrognosisAdaptor Proteins, Signal TransducingBiomarkers, TumorMembrane ProteinsTYROBP protein, humanbioinformatics analysisbiomarkerclear cell renal cell carcinomaHRGimmunotherapyTYROBP

Identifiers

PMID33015999
PMCPMC7714062
OpenAlexW3090989534

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.