Evidence map›Paper›PMID 33015751›Full record

ArticleMammalian genome : official journal of the International Mammalian Genome Society2020

Derivation of stable embryonic stem cell-like, but transcriptionally heterogenous, induced pluripotent stem cells from non-permissive mouse strains.

Tiffany A Garbutt, Kranti Konganti, Thomas Konneker, Andrew Hillhouse, Drake Phelps, Alexis Jones, David Aylor, David W Threadgill

Abstract read
In one paragraph

Article in Mammalian genome : official journal of the International Mammalian Genome Society, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Tiffany A GarbuttProgram in Genetics, Department of Biological Science, North Carolina State University, Raleigh, NC, 27695, USA.
Kranti KongantiTexas A&M Institute for Genome Sciences and Society, Texas A&M University, College Station, TX, 77843, USA.
Thomas KonnekerProgram in Genetics, Department of Biological Science, North Carolina State University, Raleigh, NC, 27695, USA.
Andrew HillhouseTexas A&M Institute for Genome Sciences and Society, Texas A&M University, College Station, TX, 77843, USA.
Drake PhelpsProgram in Genetics, Department of Biological Science, North Carolina State University, Raleigh, NC, 27695, USA.
Alexis JonesProgram in Genetics, Department of Biological Science, North Carolina State University, Raleigh, NC, 27695, USA.
David AylorProgram in Genetics, Department of Biological Science, North Carolina State University, Raleigh, NC, 27695, USA.
David W ThreadgillTexas A&M Institute for Genome Sciences and Society, Texas A&M University, College Station, TX, 77843, USA. dwt@tamu.edu.ORCID 0000-0003-3538-1635

Funding

Translational Research Support CoreP30ES025128 · NIEHS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI Sue Fenton · 2015 to 2026
$18.3M
An Interdisciplinary program for systems genomics of complex behaviorsP50MH090338 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI PARDO-MANUEL DE VILLENA, FERNANDO · 2009 to 2010
$6.0M
Integration of Genomics and the EnvironmentRM1HG008529 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI FEINBERG, ANDREW P., THREADGILL, DAVID W. · 2016 to 2020
$5.3M
Epigenetic Drivers of Intrinsic Phenotypic Variability in Metabolic DiseaseDP1DK119129 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI FEINBERG, ANDREW P. · 2018 to 2023
$3.9M
Systems Toxicogenomics of Endocrine Disrupting Chemicals in BrainU01ES026717 · NIEHS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI AYLOR, DAVID LAWRENCE · 2016 to 2019
$2.9M
NHGRI NIH HHS RM1 HG008529NIDDK NIH HHS DP1 DK119129NIEHS NIH HHS P30 ES025128NIEHS NIH HHS U01 ES026717NIMH NIH HHS P50 MH090338
6 · The paper itself

Abstract

Genetic background is known to play a role in the ability to derive pluripotent, embryonic stem cells (ESC), a trait referred to as permissiveness. Previously we demonstrated that induced pluripotent stem cells (iPSC) can be readily derived from non-permissive mouse strains by addition of serum-based media supplemented with GSK3B and MEK inhibitors, termed 2iS media, 3 days into reprogramming. Here, we describe the derivation of second type of iPSC colony from non-permissive mouse strains that can be stably maintained independently of 2iS media. The resulting cells display transcriptional heterogeneity similar to that observed in ESC from permissive genetic backgrounds derived in conventional serum containing media supplemented with leukemia inhibitor factor. However, unlike previous studies that report exclusive subpopulations, we observe both exclusive and simultaneous expression of naive and primed cell surface markers. Herein, we explore shifts in pluripotency in the presence of 2iS and characterize heterogenous subpopulations to determine their pluripotent state and role in heterogenous iPSCs derived from the non-permissive NOD/ShiLtJ strain. We conclude that heterogeneity is a naturally occurring, necessary quality of stem cells that allows for the maintenance of pluripotency. This study further demonstrates the efficacy of the 2iS reprogramming technique. It is also the first study to derive stable ESC-like stem cells from the non-permissive NOD/ShiLtJ and WSB/EiJ strains, enabling easier and broader research possibilities into pluripotency for these and similar non-permissive mouse strains and species.

Indexed as

Genetic HeterogeneityTranscriptomeAnimalsBiomarkersCell DifferentiationCells, CulturedCellular ReprogrammingEmbryonic Stem CellsGene Expression ProfilingGene Expression Regulation, DevelopmentalImmunophenotypingInduced Pluripotent Stem CellsMicePlatelet Endothelial Cell Adhesion Molecule-1Species SpecificityBiomarkersPecam1 protein, mousePlatelet Endothelial Cell Adhesion Molecule-1

Identifiers

PMID33015751
PMCPMC9113365

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.