ArticleFrontiers in bioengineering and biotechnology2020
The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering.
Article in Frontiers in bioengineering and biotechnology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed.
- From prompts to genomes: A constraint-first framework for AI-driven sequence design across life and viruses.PLoS computational biology · 2026Article
- Optimization of functional genetics tools for a model tetraploid Capsella bursa-pastoris, with focus on homoeolog-aware gene editing.Transgenic research · 2026Article
- SynVectorDB: embedding-based retrieval system for synthetic biology parts.Database : the journal of biological databases and curation · 2026Article
- High-throughput yeast engineering in biofoundries: towards autonomous and scalable synthetic biology.FEMS yeast research · 2026Review
- Achieving bottom-up ethical, legal, and societal implications and responsible research and innovation in the synthetic biology research community from the Japanese context.Frontiers in genetics · 2026Article
- Simulations predict stronger CRISPRi transcriptional repression in plants for identical than heterogeneous gRNA target sites.Synthetic biology (Oxford, England) · 2025Article
- Metadata harmonization from biological datasets with language models.Bioinformatics advances · 2025Article
- The BioRECIPE Knowledge Representation Format.ACS synthetic biology · 2024Article
- Sustainable production of natural products using synthetic biology: Ginsenosides.Journal of ginseng research · 2024Review
- Data integration strategies for whole-cell modeling.FEMS yeast research · 2024Review
- Data hazards in synthetic biology.Synthetic biology (Oxford, England) · 2024Review
- Investigating and Modeling the Factors That Affect Genetic Circuit Performance.ACS synthetic biology · 2023Article
- libSBOLj3: a graph-based library for design and data exchange in synthetic biology.Bioinformatics (Oxford, England) · 2023Article
- A PETase enzyme synthesised in the chloroplast of the microalga Chlamydomonas reinhardtii is active against post-consumer plastics.Scientific reports · 2023Article
- Functional Synthetic Biology.Synthetic biology (Oxford, England) · 2023Review
- Advancing reproducibility can ease the 'hard truths' of synthetic biology.Synthetic biology (Oxford, England) · 2023Review
- Toward FAIR Representations of Microbial Interactions.mSystems · 2022Article
- Cryptococcus neoformans Database in Synthetic Biology Open Language.Microbiology resource announcements · 2022Article
- LOICA: Integrating Models with Data for Genetic Network Design Automation.ACS synthetic biology · 2022Article
- Accurate characterization of dynamic microbial gene expression and growth rate profiles.Synthetic biology (Oxford, England) · 2022Article
Corrections and comments
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12 authors.
Funding
Abstract
The Synthetic Biology Open Language (SBOL) is a community-developed data standard that allows knowledge about biological designs to be captured using a machine-tractable, ontology-backed representation that is built using Semantic Web technologies. While early versions of SBOL focused only on the description of DNA-based components and their sub-components, SBOL can now be used to represent knowledge across multiple scales and throughout the entire synthetic biology workflow, from the specification of a single molecule or DNA fragment through to multicellular systems containing multiple interacting genetic circuits. The third major iteration of the SBOL standard, SBOL3, is an effort to streamline and simplify the underlying data model with a focus on real-world applications, based on experience from the deployment of SBOL in a variety of scientific and industrial settings. Here, we introduce the SBOL3 specification both in comparison to previous versions of SBOL and through practical examples of its use.
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Registered trials
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