ArticleFrontiers in microbiology2020
Dynamic Changes in the Microbiome of Rice During Shoot and Root Growth Derived From Seeds.
Article in Frontiers in microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
29 citing papers in PubMed, 70 citations in OpenAlex.
- Germination and Polishing Reshape Microbial Communities inJournal of agricultural and food chemistry · 2026Article
- What do we know about the seed microbiome?Microbiome · 2026Review
- Root-Driven Filtering Overrides Biochar and Microbial Inoculants in Structuring Bacterial Assemblages of Seawater Rice Cultivation Ecosystem in a Saline-Alkali Soil.Microorganisms · 2026Article
- Variations in plant's cry for help evidenced by modifications of rice root microbiota induced by blast or brown spot diseases.Environmental microbiome · 2025Article
- Dynamics of rice microbiome: insights into functional diversity, environmental influences, response to stress, and applications.World journal of microbiology & biotechnology · 2025Review
- Effects of Wild and Domesticated Seeds on the Colonization of Rhizosphere Microorganisms in Atractylodes lancea.Microbial ecology · 2025Article
- An in Planta Enrichment Route to Identify Bacterial Root Endophytes.Environmental microbiology reports · 2025Article
- Strategies for the Remediation of Micro- and Nanoplastics from Contaminated Food and Water: Advancements and Challenges.Journal of xenobiotics · 2025Review
- Article
- Investigating Microbial Diversity in the Endosphere and Rhizoplane of Three Aromatic Rice Landraces: Implications for Biological Nitrogen Fixation.Current microbiology · 2024Article
- Article
- Comparative analysis of root associated microbes in tropical cultivated and weedy rice (Oryza spp.) and temperate cultivated rice.Scientific reports · 2024Article
- Exploring the potential of endophyte-plant interactions for improving crop sustainable yields in a changing climate.Frontiers in plant science · 2024Review
- Early inoculation of an endophyte alters the assembly of bacterial communities across rice plant growth stages.Microbiology spectrum · 2023Article
- Pulsed electric field treatment of seeds altered the endophytic bacterial community and promotes early growth of roots in buckwheat.BMC microbiology · 2023Article
- Endophytic Seed-Associated Bacteria as Plant Growth Promoters of Cuban Rice (Microorganisms · 2023Article
- The microbiome of cereal plants: The current state of knowledge and the potential for future applications.Environmental microbiome · 2023Review
- Influence of Geographical Orchard Location on the Microbiome from the Progeny of a Pecan Controlled Cross.Plants (Basel, Switzerland) · 2023Article
- Geographically Disperse, Culturable Seed-Associated Microbiota in Forage Plants of Alfalfa (Biology · 2022Article
- Article
Corrections and comments
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Authors and funding
5 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Microbes form close associations with host plants including rice as both surface (epiphytes) and internal (endophytes) inhabitants. Yet despite rice being one of the most important cereal crops agriculturally and economically, knowledge of its microbiome, particularly core inhabitants and any functional properties bestowed is limited. In this study, the microbiome in rice seedlings derived directly from seeds was identified, characterized and compared to the microbiome of the seed. Rice seeds were sourced from two different locations in Arkansas, USA of two different rice genotypes (Katy, M202) from two different harvest years (2013, 2014). Seeds were planted in sterile media and bacterial as well as fungal communities were identified through 16S and ITS sequencing, respectively, for four seedling compartments (root surface, root endosphere, shoot surface, shoot endosphere). Overall, 966 bacterial and 280 fungal ASVs were found in seedlings. Greater abundance and diversity were detected for the microbiome associated with roots compared to shoots and with more epiphytes than endophytes. The seedling compartments were the driving factor for microbial community composition rather than other factors such as rice genotype, location and harvest year. Comparison with datasets from seeds revealed that 91 (out of 296) bacterial and 11 (out of 341) fungal ASVs were shared with seedlings with the majority being retained within root tissues. Core bacterial and fungal microbiome shared across seedling samples were identified. Core bacteria genera identified in this study such as
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.