Evidence map›Paper›PMID 33013724›Full record

ArticleFrontiers in microbiology2020

Ancestral Absence of Electron Transport Chains in Patescibacteria and DPANN.

Jacob P Beam, Eric D Becraft, Julia M Brown, Frederik Schulz, Jessica K Jarett, Oliver Bezuidt, Nicole J Poulton, Kayla Clark, Peter F Dunfield, Nikolai V Ravin and 12 more

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed.

  1. Article
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  5. A genomic view of Earth's biomes.Nature reviews. Genetics · 2026
    Review
  6. Article
  7. Article
  8. Article
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  12. Article
  13. Article
  14. Proposal ofISME communications · 2025
    Article
  15. Beyond genomics in Patescibacteria: A trove of unexplored biology packed into ultrasmall bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Jacob P BeamBigelow Laboratory for Ocean Sciences, East Boothbay, ME, United States.
Eric D BecraftBigelow Laboratory for Ocean Sciences, East Boothbay, ME, United States.
Julia M BrownBigelow Laboratory for Ocean Sciences, East Boothbay, ME, United States.
Frederik SchulzDepartment of Energy Joint Genome Institute, Berkeley, CA, United States.
Jessica K JarettDepartment of Energy Joint Genome Institute, Berkeley, CA, United States.
Oliver BezuidtBigelow Laboratory for Ocean Sciences, East Boothbay, ME, United States.
Nicole J PoultonBigelow Laboratory for Ocean Sciences, East Boothbay, ME, United States.
Kayla ClarkBigelow Laboratory for Ocean Sciences, East Boothbay, ME, United States.
Peter F DunfieldDepartment of Biological Sciences, University of Calgary, Calgary, AB, Canada.
Nikolai V RavinInstitute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russia.
John R SpearCivil and Environmental Engineering, Colorado School of Mines, Golden, CO, United States.
Brian P HedlundSchool of Life Sciences - Nevada Institute of Personalized Medicine, University of Nevada, Las Vegas, Las Vegas, NV, United States.
Konstantinos A KormasDepartment of Ichthyology and Aquatic Environment, University of Thessaly, Volos, Greece.
Stefan M SievertBiology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, United States.
Mostafa S ElshahedDepartment of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States.
Hazel A BartonDepartment of Biology, University of Akron, Akron, OH, United States.
Matthew B StottSchool of Biological Sciences, University of Canterbury, Christchurch, New Zealand.
Jonathan A EisenDepartment of Evolution and Ecology, Department of Medical Microbiology and Immunology, Genome Center, University of California, Davis, Davis, CA, United States.
Duane P MoserDesert Research Institute, Las Vegas, NV, United States.
Tullis C OnstottDepartment of Geosciences, Princeton University, Princeton, NJ, United States.
Tanja WoykeDepartment of Energy Joint Genome Institute, Berkeley, CA, United States.
Ramunas StepanauskasBigelow Laboratory for Ocean Sciences, East Boothbay, ME, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent discoveries suggest that the candidate superphyla Patescibacteria and DPANN constitute a large fraction of the phylogenetic diversity of Bacteria and Archaea. Their small genomes and limited coding potential have been hypothesized to be ancestral adaptations to obligate symbiotic lifestyles. To test this hypothesis, we performed cell-cell association, genomic, and phylogenetic analyses on 4,829 individual cells of Bacteria and Archaea from 46 globally distributed surface and subsurface field samples. This confirmed the ubiquity and abundance of Patescibacteria and DPANN in subsurface environments, the small size of their genomes and cells, and the divergence of their gene content from other Bacteria and Archaea. Our analyses suggest that most Patescibacteria and DPANN in the studied subsurface environments do not form specific physical associations with other microorganisms. These data also suggest that their unusual genomic features and prevalent auxotrophies may be a result of ancestral, minimal cellular energy transduction mechanisms that lack respiration, thus relying solely on fermentation for energy conservation.

Indexed as

ArchaeaBacteriaevolutiongenomics fermentationoxidoreductasesrespiration

Identifiers

PMID33013724
PMCPMC7507113

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.