ArticleScientific data2020
A database for risk assessment and comparative genomic analysis of foodborne Vibrio parahaemolyticus in China.
Article in Scientific data, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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Who cites it
12 citing papers in PubMed.
- Strain-level heterogeneity in Vibrio parahaemolyticus limits the predictive value of baseline planktonic gene expression for surface-associated phenotypes.Scientific reports · 2026Article
- Isolation and Characterization of a Cold-Adapted Bacteriophage for Biocontrol ofFoods (Basel, Switzerland) · 2025Article
- Prevalence and Genomic Characterization ofFoods (Basel, Switzerland) · 2025Article
- Replicon family of Vibrionaceae plasmids as a reservoir of antimicrobial and phage resistance genes in marine ecosystems.The ISME journal · 2025Article
- Epidemiological characteristics, virulence genes, and antimicrobial resistance analysis ofFrontiers in microbiology · 2025Article
- Antimicrobial Activity and Mechanisms of Punicalagin againstFoods (Basel, Switzerland) · 2024Article
- Epidemiological and Genomic analysis of Vibrio parahaemolyticus isolated from imported travelers at the port of Shanghai, China (2017-2019).BMC microbiology · 2024Article
- Contamination ofFrontiers in microbiology · 2024Article
- Virulence and resistance patterns ofFrontiers in microbiology · 2023Article
- Article
- Qualitative and Quantitative Detection of Potentially VirulentPathogens (Basel, Switzerland) · 2021Article
- A database for risk assessment and comparative genomic analysis of foodborne Vibrio parahaemolyticus in China.Scientific data · 2020Article
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Authors and funding
12 authors.
Funding
Abstract
Vibrio parahaemolyticus is a major foodborne pathogen worldwide. The increasing number of cases of V. parahaemolyticus infections in China indicates an urgent need to evaluate the prevalence and genetic diversity of this pathogenic bacterium. In this paper, we introduce the Foodborne Vibrio parahaemolyticus genome database (FVPGD), the first scientific database of foodborne V. parahaemolyticus distribution and genomic data in China, based on our previous investigations of V. parahaemolyticus contamination in different kinds of food samples across China from 2011 to 2016. The dataset includes records of 2,499 food samples and 643 V. parahaemolyticus strains from supermarkets and marketplaces distributed over 39 cities in China; 268 whole-genome sequences have been deposited in this database. A spatial view on the risk situations of V. parahaemolyticus contamination in different food types is provided. Additionally, the database provides a functional interface of sequence BLAST, core genome multilocus sequence typing, and phylogenetic analysis. The database will become a powerful tool for risk assessment and outbreak investigations of foodborne pathogens in China.
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