Evidence map›Paper›PMID 33009385›Full record

ArticleNature communications2020

Cryo-EM structure of a Ca

Kazutoshi Tani, Ryo Kanno, Yuki Makino, Malgorzata Hall, Mizuki Takenouchi, Michie Imanishi, Long-Jiang Yu, Jörg Overmann, Michael T Madigan, Yukihiro Kimura and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 52 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Probing the Dual Role of CaBiomolecules · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Microorganisms · 2023
    Article
  12. Article
  13. Article
  14. Research square · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 4 countries.

Kazutoshi Tani *Graduate School of Medicine, Mie University, Tsu, 514-8507, Japan. ktani@doc.medic.mie-u.ac.jp.ORCID http://orcid.org/0000-0003-4835-154X
Ryo Kanno *Imaging Section, Research Support Division, Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1, Tancha, Onna-son, Kunigami-gun, Okinawa, 904-0495, Japan.
Yuki MakinoFaculty of Science, Ibaraki University, Mito, 310-8512, Japan.
Malgorzata HallImaging Section, Research Support Division, Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1, Tancha, Onna-son, Kunigami-gun, Okinawa, 904-0495, Japan.
Mizuki TakenouchiFaculty of Science, Ibaraki University, Mito, 310-8512, Japan.
Michie ImanishiDepartment of Agrobioscience, Graduate School of Agriculture, Kobe University, Nada, Kobe, 657-8501, Japan.
Long-Jiang YuPhotosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.ORCID http://orcid.org/0000-0002-4962-1049
Jörg OvermannLeibniz-Institute DSMZ-German Collection of Microorganisms and Cell Cultures, 38124, Braunschweig, Germany.ORCID http://orcid.org/0000-0003-3909-7201
Michael T MadiganDepartment of Microbiology, Southern Illinois University, Carbondale, IL, 62901, USA.
Yukihiro KimuraDepartment of Agrobioscience, Graduate School of Agriculture, Kobe University, Nada, Kobe, 657-8501, Japan.
Akira MizoguchiGraduate School of Medicine, Mie University, Tsu, 514-8507, Japan.
Bruno M HumbelImaging Section, Research Support Division, Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1, Tancha, Onna-son, Kunigami-gun, Okinawa, 904-0495, Japan.
Zheng-Yu Wang-OtomoFaculty of Science, Ibaraki University, Mito, 310-8512, Japan. wang@ml.ibaraki.ac.jp.ORCID http://orcid.org/0000-0003-1676-2002
Ibaraki University · JPOkinawa Institute of Science and Technology Graduate University · JPKobe University · JPMie University · JPChinese Academy of Sciences · CNLeibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures · DESouthern Illinois University Carbondale · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The light-harvesting-reaction center complex (LH1-RC) from the purple phototrophic bacterium Thiorhodovibrio strain 970 exhibits an LH1 absorption maximum at 960 nm, the most red-shifted absorption for any bacteriochlorophyll (BChl) a-containing species. Here we present a cryo-EM structure of the strain 970 LH1-RC complex at 2.82 Å resolution. The LH1 forms a closed ring structure composed of sixteen pairs of the αβ-polypeptides. Sixteen Ca ions are present in the LH1 C-terminal domain and are coordinated by residues from the αβ-polypeptides that are hydrogen-bonded to BChl a. The Ca

Indexed as

Cryoelectron MicroscopyPhotosynthesisAmino Acid SequenceBacteriochlorophyll ABinding SitesCalciumChromatiaceaeDetergentsDimerizationLight-Harvesting Protein ComplexesLipidsPeptidesQuinonesBacteriochlorophyll ACalciumDetergentsLight-Harvesting Protein ComplexesLipidsPeptidesQuinones

Identifiers

PMID33009385
PMCPMC7532537
OpenAlexW3089388306

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.