Evidence map›Paper›PMID 33008888›Full record

ArticleThe Journal of biological chemistry2020

Enhanced enzyme kinetics of reverse transcriptase variants cloned from animals infected with SIVmac239 lacking viral protein X.

Si'Ana A Coggins, Dong-Hyun Kim, Raymond F Schinazi, Ronald C Desrosier, Baek Kim

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Si'Ana A CogginsDepartment of Pediatrics, School of Medicine, Emory University, Atlanta, Georgia, USA.
Dong-Hyun KimDepartment of Pharmacy, Kyung-Hee University, Seoul, South Korea.
Raymond F SchinaziDepartment of Pediatrics, School of Medicine, Emory University, Atlanta, Georgia, USA.
Ronald C DesrosierDepartment of Pathology, Miller School of Medicine, University of Miami, Miami, Florida, USA.
Baek KimDepartment of Pediatrics, School of Medicine, Emory University, Atlanta, Georgia, USA; Children's Healthcare of Atlanta, Atlanta, Georgia, USA. Electronic address: baek.kim@emory.edu.
Emory University · USKyung Hee University · KRUniversity of Miami · US

Funding

Lentivirus Replication Strategy and PathogenesisR01AI136581 · NIAID · EMORY UNIVERSITY · PI Baek Kim · 2018 to 2026
$3.9M
Towards Suppression and Elimination of HIV in the CNSR01MH116695 · NIMH · EMORY UNIVERSITY · PI SCHINAZI, RAYMOND FELIX, TYOR, WILLIAM R · 2018 to 2022
$3.4M
SAMHD1 controls dNTP pool and HIV sensitivity to NRTIsR01AI150451 · NIAID · EMORY UNIVERSITY · PI KIM, BAEK · 2019 to 2019
$311k
NIAID NIH HHS R01 AI136581NIAID NIH HHS R01 AI150451NIMH NIH HHS R01 MH116695
6 · The paper itself

Abstract

HIV Type 1 (HIV-1) and simian immunodeficiency virus (SIV) display differential replication kinetics in macrophages. This is because high expression levels of the active host deoxynucleotide triphosphohydrolase sterile α motif domain and histidine-aspartate domain-containing protein 1 (SAMHD1) deplete intracellular dNTPs, which restrict HIV-1 reverse transcription, and result in a restrictive infection in this myeloid cell type. Some SIVs overcome SAMHD1 restriction using viral protein X (Vpx), a viral accessory protein that induces proteasomal degradation of SAMHD1, increasing cellular dNTP concentrations and enabling efficient proviral DNA synthesis. We previously reported that SAMHD1-noncounteracting lentiviruses may have evolved to harbor RT proteins that efficiently polymerize DNA, even at low dNTP concentrations, to circumvent SAMHD1 restriction. Here we investigated whether RTs from SIVmac239 virus lacking a Vpx protein evolve during

Indexed as

MutationAnimalsHost-Pathogen InteractionsKineticsMacaca mulattaMacrophagesNucleotidesProtein Structure, TertiaryRNA-Directed DNA PolymeraseSAM Domain and HD Domain-Containing Protein 1Simian Acquired Immunodeficiency SyndromeSimian Immunodeficiency VirusViral Regulatory and Accessory ProteinsNucleotidesRNA-Directed DNA PolymeraseSAM Domain and HD Domain-Containing Protein 1Viral Regulatory and Accessory ProteinsVPX protein, Simian immunodeficiency virusdNTPsenzyme kineticslentiviruslentivirusesmacrophagesnucleotidereverse transcriptasesterile α motif domain and histidine-aspartate domain–containing protein 1 (SAMHD1)Vpx

Identifiers

PMID33008888
PMCPMC7863885
OpenAlexW3089460284

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.