Evidence map›Paper›PMID 33008368›Full record

ArticleBMC medical informatics and decision making2020

Prediction of incident myocardial infarction using machine learning applied to harmonized electronic health record data.

Divneet Mandair, Premanand Tiwari, Steven Simon, Kathryn L Colborn, Michael A Rosenberg

Abstract read
In one paragraph

Article in BMC medical informatics and decision making, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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  13. Anatomy-Informed Multimodal Learning for Myocardial Infarction Prediction.IEEE open journal of engineering in medicine and biology · 2024
    Article
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  15. Personalized hypertension treatment recommendations by a data-driven model.BMC medical informatics and decision making · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Divneet MandairDivision of Internal Medicine, University of Colorado School of Medicine, Aurora, CO, USA.
Premanand TiwariColorado Center for Personalized Medicine, University of Colorado School of Medicine, Aurora, CO, USA.
Steven SimonDivision of Cardiology and Cardiac Electrophysiology, University of Colorado School of Medicine, 12631 E. 17th Avenue, Mail Stop B130, Aurora, CO, 80045, USA.
Kathryn L ColbornDepartment of Surgery, University of Colorado School of Medicine, Aurora, CO, USA.
Michael A RosenbergDivision of Internal Medicine, University of Colorado School of Medicine, Aurora, CO, USA. michael.a.rosenberg@cuanschutz.edu.ORCID 0000-0002-6708-1648

Funding

Development of End-To-End Clinical Decision Support Tools To Prevent Cardiotoxic Drug ResponseR01HL146824 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI ROSENBERG, MICHAEL A · 2020 to 2024
$3.9M
Genetics of Cardiotoxic Drug ResponseK23HL127296 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI ROSENBERG, MICHAEL A · 2015 to 2020
$932k
NHLBI NIH HHS K23 HL127296NHLBI NIH HHS L30 HL123413NHLBI NIH HHS R01 HL146824
6 · The paper itself

Abstract

backgroundWith cardiovascular disease increasing, substantial research has focused on the development of prediction tools. We compare deep learning and machine learning models to a baseline logistic regression using only 'known' risk factors in predicting incident myocardial infarction (MI) from harmonized EHR data.

methodsLarge-scale case-control study with outcome of 6-month incident MI, conducted using the top 800, from an initial 52 k procedures, diagnoses, and medications within the UCHealth system, harmonized to the Observational Medical Outcomes Partnership common data model, performed on 2.27 million patients. We compared several over- and under- sampling techniques to address the imbalance in the dataset. We compared regularized logistics regression, random forest, boosted gradient machines, and shallow and deep neural networks. A baseline model for comparison was a logistic regression using a limited set of 'known' risk factors for MI. Hyper-parameters were identified using 10-fold cross-validation.

resultsTwenty thousand Five hundred and ninety-one patients were diagnosed with MI compared with 2.25 million who did not. A deep neural network with random undersampling provided superior classification compared with other methods. However, the benefit of the deep neural network was only moderate, showing an F1 Score of 0.092 and AUC of 0.835, compared to a logistic regression model using only 'known' risk factors. Calibration for all models was poor despite adequate discrimination, due to overfitting from low frequency of the event of interest.

conclusionsOur study suggests that DNN may not offer substantial benefit when trained on harmonized data, compared to traditional methods using established risk factors for MI.

Indexed as

Machine LearningCase-Control StudiesElectronic Health RecordsFemaleHumansIncidenceMyocardial InfarctionPredictive Value of TestsElectronic health recordsMachine learningMyocardial infarction

Identifiers

PMID33008368
PMCPMC7532582

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.