Evidence map›Paper›PMID 33007216›Full record

ArticleCell chemical biology2020

A Method for Conditional Regulation of Protein Stability in Native or Near-Native Form.

Yusaku Miyamae, Ling-Chun Chen, Yuki Utsugi, Helen Farrants, Thomas J Wandless

Open access · bronzeAbstract read
In one paragraph

Article in Cell chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Fast friends - Ubiquitin-like modifiers as engineered fusion partners.Seminars in cell & developmental biology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Yusaku MiyamaeDepartment of Chemical & Systems Biology, Stanford University, Stanford, CA 94305, U.S.A; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki 305-8572, Japan.
Ling-Chun ChenDepartment of Chemical & Systems Biology, Stanford University, Stanford, CA 94305, U.S.A.
Yuki UtsugiMaster's/Doctoral Program in Life Science Innovation, University of Tsukuba, Ibaraki 305-8572, Japan.
Helen FarrantsDepartment of Chemical & Systems Biology, Stanford University, Stanford, CA 94305, U.S.A.
Thomas J WandlessDepartment of Chemical & Systems Biology, Stanford University, Stanford, CA 94305, U.S.A. Electronic address: wandless@stanford.edu.
Stanford University · USUniversity of Tsukuba · JP

Funding

Translational Oncology Research Program (Project-005)P30CA124435 · NCI · STANFORD UNIVERSITY · PI Melinda L. Telli · 2007 to 2026
$71.4M
Novel Molecules as In Vivo Biological ProbesR01GM073046 · NIGMS · STANFORD UNIVERSITY · PI WANDLESS, THOMAS JAMES · 2006 to 2017
$3.6M
Regulated Protein DegradationR01GM145715 · NIGMS · STANFORD UNIVERSITY · PI WANDLESS, THOMAS JAMES · 2022 to 2023
$637k
NIGMS NIH HHS R01 GM073046NIGMS NIH HHS R01 GM145715
6 · The paper itself

Abstract

Here, we report a method to regulate cellular protein levels by introducing a ubiquitin variant between a destabilizing domain (DD) and the regulated protein. When produced in the absence of a stabilizing ligand the DD dominates and the entire fusion protein is processively degraded by the proteasome. In the presence of the stabilizing ligand the fusion protein is metabolically stable and becomes a substrate for abundant ubiquitin-specific proteases, liberating a native, or a near-native protein-of-interest. This technique is thus particularly useful for the study of proteins whose free N terminus is required for proper function. In addition, removal of the DD in the presence of stabilizing ligand leads to higher expression levels of regulated protein when cells experience transient exposure to a stabilizing ligand, such as in a living animal receiving a single dose of a pharmacological agent as the stabilizing ligand.

Indexed as

AnimalsPeptide HydrolasesProtein DomainsProtein EngineeringProtein StabilityRecombinant Fusion ProteinsUbiquitinPeptide HydrolasesRecombinant Fusion ProteinsUbiquitindegradationdestabilized domaindeubiquitinaseprotein stabilityubiquitin

Identifiers

PMID33007216
PMCPMC7749034
OpenAlexW3090536812

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.