Evidence map›Paper›PMID 33006728›Full record

ArticleDrug safety2021

ADE Eval: An Evaluation of Text Processing Systems for Adverse Event Extraction from Drug Labels for Pharmacovigilance.

Samuel Bayer, Cheryl Clark, Oanh Dang, John Aberdeen, Sonja Brajovic, Kimberley Swank, Lynette Hirschman, Robert Ball

Open access · hybridAbstract read
In one paragraph

Article in Drug safety, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.0field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. PVLens: Enhancing Pharmacovigilance Through Automated Label Extraction.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2024
    Article
  4. RxBERT: Enhancing drug labeling text mining and analysis with AI language modeling.Experimental biology and medicine (Maywood, N.J.) · 2023
    Article
  5. Article
  6. Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Samuel BayerThe MITRE Corporation, 202 Burlington Rd, Bedford, MA, 01730, USA.
Cheryl ClarkThe MITRE Corporation, 202 Burlington Rd, Bedford, MA, 01730, USA.
Oanh DangOffice of Surveillance and Epidemiology, Center for Drug Evaluation and Research, US Food and Drug Administration, Silver Spring, MD, USA.
John AberdeenThe MITRE Corporation, 202 Burlington Rd, Bedford, MA, 01730, USA. aberdeen@mitre.org.ORCID 0000-0002-0112-1037
Sonja BrajovicOffice of Surveillance and Epidemiology, Center for Drug Evaluation and Research, US Food and Drug Administration, Silver Spring, MD, USA.
Kimberley SwankOffice of Surveillance and Epidemiology, Center for Drug Evaluation and Research, US Food and Drug Administration, Silver Spring, MD, USA.
Lynette HirschmanThe MITRE Corporation, 202 Burlington Rd, Bedford, MA, 01730, USA.
Robert BallOffice of Surveillance and Epidemiology, Center for Drug Evaluation and Research, US Food and Drug Administration, Silver Spring, MD, USA.
Mitre (United States) · USUnited States Food and Drug Administration · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionThe US FDA is interested in a tool that would enable pharmacovigilance safety evaluators to automate the identification of adverse drug events (ADEs) mentioned in FDA prescribing information. The MITRE Corporation (MITRE) and the FDA organized a shared task-Adverse Drug Event Evaluation (ADE Eval)-to determine whether the performance of algorithms currently used for natural language processing (NLP) might be good enough for real-world use.

objectiveADE Eval was conducted to evaluate a range of NLP techniques for identifying ADEs mentioned in publicly available FDA-approved drug labels (package inserts). It was designed specifically to reflect pharmacovigilance practices within the FDA and model possible pharmacovigilance use cases.

methodsPharmacovigilance-specific annotation guidelines and annotated corpora were created. Two metrics modeled the experiences of FDA safety evaluators: one measured the ability of an algorithm to identify correct Medical Dictionary for Regulatory Activities (MedDRA

resultsIn total, 13 teams submitted 23 runs: the top MedDRA

conclusionWhile NLP techniques do not perform at levels that would allow them to be used without intervention, it is now worthwhile exploring making NLP outputs available in human pharmacovigilance workflows.

Indexed as

Drug-Related Side Effects and Adverse ReactionsPharmaceutical PreparationsAdverse Drug Reaction Reporting SystemsAlgorithmsHumansNatural Language ProcessingPharmacovigilancePharmaceutical Preparations

Identifiers

PMID33006728
PMCPMC7813736
OpenAlexW3090154146

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.