Evidence map›Paper›PMID 33004862›Full record

ArticleScientific reports2020

In silico analysis and in vivo assessment of a novel epitope-based vaccine candidate against uropathogenic Escherichia coli.

Sara Hasanzadeh, Mehri Habibi, Mohammad Ali Shokrgozar, Reza Ahangari Cohan, Khadijeh Ahmadi, Mohammad Reza Asadi Karam, Saeid Bouzari

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
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  14. Urinary Tract Infections Caused by UropathogenicInternational journal of molecular sciences · 2023
    Review
  15. The Diversity ofMicroorganisms · 2023
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. A new candidate epitope-based vaccine against PspA PhtD ofFrontiers in cellular and infection microbiology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Sara HasanzadehDepartment of Molecular Biology, Pasteur Institute of Iran, Tehran, Iran.
Mehri HabibiDepartment of Molecular Biology, Pasteur Institute of Iran, Tehran, Iran.ORCID http://orcid.org/0000-0003-2191-7873
Mohammad Ali ShokrgozarNational Cell Bank, Pasteur Institute of Iran, Tehran, Iran.
Reza Ahangari CohanDepartment of Nanobiotechnology, Pasteur Institute of Iran, Tehran, Iran.
Khadijeh AhmadiInfectious and Tropical Diseases Research Center, Hormozgan Health Institute, Hormozgan University of Medical Sciences, Bandar Abbas, Iran.
Mohammad Reza Asadi KaramDepartment of Molecular Biology, Pasteur Institute of Iran, Tehran, Iran. m_asadi12@yahoo.com.
Saeid BouzariDepartment of Molecular Biology, Pasteur Institute of Iran, Tehran, Iran. saeidbouzari@yahoo.com.
Pasteur Institute of Iran · IRHormozgan University of Medical Sciences · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Uropathogenic Escherichia coli (UPEC) are common pathogens in urinary tract infections (UTIs), which show resistance to antibiotics. Therefore, there is a need for a vaccine to reduce susceptibility to the infection. In the present study, bioinformatics approaches were employed to predict the best B and T-cell epitopes of UPEC virulence proteins to develop a multiepitope vaccine candidate against UPEC. Then, the efficacy of the candidate was studied with and without Freund adjuvant. Using bioinformatics methods, 3 epitope-rich domains of IutA and FimH antigens were selected to construct the fusion. Molecular docking and Molecular dynamics (MD) simulation were employed to investigate in silico interaction between designed vaccine and Toll-like receptor 4 (TLR4). Our results showed that the levels of IgG and IgA antibodies were improved in the serum and mucosal samples of the vaccinated mice, and the IgG responses were maintained for at least 6 months. The fusion protein was also able to enhance the level of cytokines IFN.γ (Th1), IL.4 (Th2), and IL.17. In challenge experiments, all vaccine combinations showed high potency in the protection of the urinary tract even after 6 months post first injection. The present study indicates that the designed candidate is able to evoke strong protective responses which warrant further studies.

Indexed as

AnimalsComputer SimulationCytokinesEpitopesEscherichia coli InfectionsEscherichia coli VaccinesImmunoglobulin GMiceMice, Inbred BALB CMolecular Docking SimulationToll-Like Receptor 4Urinary Tract InfectionsUropathogenic Escherichia coliCytokinesEpitopesEscherichia coli VaccinesImmunoglobulin GTlr4 protein, mouseToll-Like Receptor 4

Identifiers

PMID33004862
PMCPMC7530722
OpenAlexW3089763176

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.