Evidence map›Paper›PMID 33004674›Full record

ArticleScience (New York, N.Y.)2020

Gene regulatory networks controlling vertebrate retinal regeneration.

Thanh Hoang, Jie Wang, Patrick Boyd, Fang Wang, Clayton Santiago, Lizhi Jiang, Sooyeon Yoo, Manuela Lahne, Levi J Todd, Meng Jia and 16 more

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 270 papers.

0numbers the graph read from it
0cells of the map it votes in
270citing papers in PubMed
21.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

270 citing papers in PubMed, 458 citations in OpenAlex.

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  10. Hopx(+) optic nerve head-astrocytes counter neuronal stress and glaucoma damage.Proceedings of the National Academy of Sciences of the United States of America · 2026
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210 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 4 institutions in 1 country.

Thanh Hoang *Solomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.ORCID 0000-0002-7666-3842
Jie Wang *Department of Ophthalmology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.ORCID 0000-0002-7491-7001
Patrick BoydDepartment of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA.ORCID 0000-0001-5957-5202
Fang WangDepartment of Ophthalmology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.ORCID 0000-0002-1491-5207
Clayton SantiagoSolomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.ORCID 0000-0001-7191-668X
Lizhi JiangSolomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Sooyeon YooSolomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.ORCID 0000-0003-4718-900X
Manuela LahneDepartment of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA.ORCID 0000-0002-9707-4721
Levi J ToddDepartment of Neuroscience, Ohio State University Wexner Medical Center, Columbus, OH 43210, USA.ORCID 0000-0003-2561-7675
Meng JiaDepartment of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA.ORCID 0000-0002-9767-7258
Cristian SaezSolomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.ORCID 0000-0003-4846-3680
Casey KeuthanDepartment of Ophthalmology, University of Florida School of Medicine, Gainesville, FL 32610, USA.ORCID 0000-0001-9422-490X
Isabella PalazzoDepartment of Neuroscience, Ohio State University Wexner Medical Center, Columbus, OH 43210, USA.ORCID 0000-0002-5752-0969
Natalie SquiresDepartment of Neuroscience, Ohio State University Wexner Medical Center, Columbus, OH 43210, USA.ORCID 0000-0003-2608-0208
Warren A CampbellDepartment of Neuroscience, Ohio State University Wexner Medical Center, Columbus, OH 43210, USA.ORCID 0000-0003-4913-5945
Fatemeh RajaiiDepartment of Ophthalmology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.ORCID 0000-0002-1012-2293
Trisha ParayilSolomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.ORCID 0000-0001-6557-9592
Vickie TrinhSolomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.ORCID 0000-0002-2334-3124
Dong Won KimSolomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Guohua WangDepartment of Ophthalmology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.ORCID 0000-0001-7381-2374
Leah J CampbellDepartment of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA.ORCID 0000-0002-1666-2143
John AshDepartment of Ophthalmology, University of Florida School of Medicine, Gainesville, FL 32610, USA.ORCID 0000-0002-8330-7301
Andy J FischerDepartment of Neuroscience, Ohio State University Wexner Medical Center, Columbus, OH 43210, USA.ORCID 0000-0001-6123-7405
David R HydeDepartment of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA. dhyde@nd.edu jiang.qian@jhmi.edu sblack@jhmi.edu.ORCID 0000-0003-0198-4403
Jiang QianDepartment of Ophthalmology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. dhyde@nd.edu jiang.qian@jhmi.edu sblack@jhmi.edu.ORCID 0000-0002-0476-3596
Seth BlackshawSolomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. dhyde@nd.edu jiang.qian@jhmi.edu sblack@jhmi.edu.ORCID 0000-0002-1338-8476
Johns Hopkins University · USThe Ohio State University Wexner Medical Center · USUniversity of Notre Dame · USUniversity of Florida · US

Funding

Wilmer Core Grant for Vision ResearchP30EY001765 · NEI · JOHNS HOPKINS UNIVERSITY · PI Ji Yi · 1985 to 2026
$22.1M
Visual Science Training ProgramT32EY007143 · NEI · JOHNS HOPKINS UNIVERSITY · PI Laura Ensign, JEREMY NATHANS · 1995 to 2026
$6.2M
Transcriptional regulation of retinal cell differentiation and functionR01EY020560 · NEI · JOHNS HOPKINS UNIVERSITY · PI BLACKSHAW, SETH · 2011 to 2021
$4.4M
Cytokine Regulation of Photoreceptor Gene ExpressionR01EY016459 · NEI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI ASH, JOHN D · 2006 to 2017
$4.0M
Comparative transcriptomic and epigenomic analyses of Muller glia reprogrammingU01EY027267 · NEI · UNIVERSITY OF NOTRE DAME · PI BLACKSHAW, SETH, HYDE, DAVID R · 2016 to 2019
$3.0M
Computational Tools for Single Cell Analysis: Application to Retinal DegenerationR01EY029548 · NEI · JOHNS HOPKINS UNIVERSITY · PI QIAN, JIANG, ZACK, DONALD J. · 2018 to 2021
$1.6M
Roles of TNFa and Notch to Initiate Retinal Regeneration from Muller gliaR01EY024519 · NEI · UNIVERSITY OF NOTRE DAME · PI HYDE, DAVID R · 2015 to 2017
$1.1M
Identification of pathways involved in orbital adipogenesis using functional genomicsK08EY027093 · NEI · JOHNS HOPKINS UNIVERSITY · PI RAJAII, FATEMEH · 2016 to 2020
$862k
NEI NIH HHS K08 EY027093NEI NIH HHS P30 EY001765NEI NIH HHS R01 EY016459NEI NIH HHS R01 EY020560NEI NIH HHS R01 EY024519NEI NIH HHS R01 EY029548NEI NIH HHS T32 EY007143NEI NIH HHS U01 EY027267
6 · The paper itself

Abstract

Injury induces retinal Müller glia of certain cold-blooded vertebrates, but not those of mammals, to regenerate neurons. To identify gene regulatory networks that reprogram Müller glia into progenitor cells, we profiled changes in gene expression and chromatin accessibility in Müller glia from zebrafish, chick, and mice in response to different stimuli. We identified evolutionarily conserved and species-specific gene networks controlling glial quiescence, reactivity, and neurogenesis. In zebrafish and chick, the transition from quiescence to reactivity is essential for retinal regeneration, whereas in mice, a dedicated network suppresses neurogenic competence and restores quiescence. Disruption of nuclear factor I transcription factors, which maintain and restore quiescence, induces Müller glia to proliferate and generate neurons in adult mice after injury. These findings may aid in designing therapies to restore retinal neurons lost to degenerative diseases.

Indexed as

Gene Regulatory NetworksAnimalsCellular ReprogrammingChickensEpendymoglial CellsGene Expression Regulation, DevelopmentalMiceNerve RegenerationNeurogenesisRNA-SeqZebrafish

Identifiers

PMID33004674
PMCPMC7899183
OpenAlexW3091204347

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.