Evidence map›Paper›PMID 33004626›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

The role of fibril structure and surface hydrophobicity in secondary nucleation of amyloid fibrils.

Dev Thacker, Kalyani Sanagavarapu, Birgitta Frohm, Georg Meisl, Tuomas P J Knowles, Sara Linse

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed.

  1. Article
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  9. The p3 peptides (AβNature communications · 2025
    Article
  10. Article
  11. Secondary Nucleation of Aβ Revealed by Single-Molecule and Computational Approaches.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Structural characterization of E22G AβPhysical chemistry chemical physics : PCCP · 2024
    Article
  16. Self-replication of AProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  17. Article
  18. Mechanisms and pathology of protein misfolding and aggregation.Nature reviews. Molecular cell biology · 2023
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Dev ThackerDepartment of Biochemistry and Structural Biology, Lund University, SE22100 Lund, Sweden.ORCID 0000-0001-6171-9703
Kalyani SanagavarapuDepartment of Biochemistry and Structural Biology, Lund University, SE22100 Lund, Sweden.
Birgitta FrohmDepartment of Biochemistry and Structural Biology, Lund University, SE22100 Lund, Sweden.
Georg MeislDepartment of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom.ORCID 0000-0002-6562-7715
Tuomas P J KnowlesDepartment of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom.
Sara LinseDepartment of Biochemistry and Structural Biology, Lund University, SE22100 Lund, Sweden; sara.linse@biochemistry.lu.se.ORCID 0000-0001-9629-7109

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Crystals, nanoparticles, and fibrils catalyze the generation of new aggregates on their surface from the same type of monomeric building blocks as the parent assemblies. This secondary nucleation process can be many orders of magnitude faster than primary nucleation. In the case of amyloid fibrils associated with Alzheimer's disease, this process leads to the multiplication and propagation of aggregates, whereby short-lived oligomeric intermediates cause neurotoxicity. Understanding the catalytic activity is a fundamental goal in elucidating the molecular mechanisms of Alzheimer's and associated diseases. Here we explore the role of fibril structure and hydrophobicity by asking whether the V18, A21, V40, and A42 side chains which are exposed on the Aβ42 fibril surface as continuous hydrophobic patches play a role in secondary nucleation. Single, double, and quadruple serine substitutions were made. Kinetic analyses of aggregation data at multiple monomer concentrations reveal that all seven mutants retain the dominance of secondary nucleation as the main mechanism of fibril proliferation. This finding highlights the generality of secondary nucleation and its independence of the detailed molecular structure. Cryo-electron micrographs reveal that the V18S substitution causes fibrils to adopt a distinct morphology with longer twist distance than variants lacking this substitution. Self- and cross-seeding data show that surface catalysis is only efficient between peptides of identical morphology, indicating a templating role of secondary nucleation with structural conversion at the fibril surface. Our findings thus provide clear evidence that the propagation of amyloid fibril strains is possible even in systems dominated by secondary nucleation rather than fragmentation.

Indexed as

AmyloidCryoelectron MicroscopyEscherichia coliGene Expression RegulationHumansHydrophobic and Hydrophilic InteractionsModels, MolecularProtein ConformationAmyloidamyloidsecondary nucleationstrain propagationsurface catalysis

Identifiers

PMID33004626
PMCPMC7568274

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.