Evidence map›Paper›PMID 33001992›Full record

ArticlePLoS neglected tropical diseases2020

High-quality nuclear genome for Sarcoptes scabiei-A critical resource for a neglected parasite.

Pasi K Korhonen, Robin B Gasser, Guangxu Ma, Tao Wang, Andreas J Stroehlein, Neil D Young, Ching-Seng Ang, Deepani D Fernando, Hieng C Lu, Sara Taylor and 10 more

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Scabies.Nature reviews. Disease primers · 2024
    Review
  5. Review
  6. Article
  7. Assembly of a Draft Genome for the Mouse EctoparasiteJournal of the American Association for Laboratory Animal Science : JAALAS · 2023
    Article
  8. Article
  9. Article
  10. Effects ofInternational journal of molecular sciences · 2022
    Article
  11. Evidence that Transcriptional Alterations inInternational journal of molecular sciences · 2022
    Article
  12. Article
  13. Article
  14. Laboratory-based diagnosis of scabies: a review of the current status.Transactions of the Royal Society of Tropical Medicine and Hygiene · 2022
    Review
  15. An RNA Interference Tool to Silence Genes inInternational journal of molecular sciences · 2022
    Article
  16. Transcriptome Analysis ofFrontiers in microbiology · 2022
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 7 institutions in 3 countries.

Pasi K KorhonenFaculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria, Australia.ORCID 0000-0002-9957-4674
Robin B GasserFaculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria, Australia.
Guangxu MaFaculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria, Australia.
Tao WangFaculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria, Australia.
Andreas J StroehleinFaculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria, Australia.
Neil D YoungFaculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria, Australia.
Ching-Seng AngBio21 Mass Spectrometry and Proteomics Facility, The University of Melbourne, Melbourne, Victoria, Australia.ORCID 0000-0001-7861-6719
Deepani D FernandoCell and Molecular Biology Department, Infectious Diseases Program, QIMR Berghofer Medical Research Institute, Brisbane, Queensland, Australia.
Hieng C LuCell and Molecular Biology Department, Infectious Diseases Program, QIMR Berghofer Medical Research Institute, Brisbane, Queensland, Australia.ORCID 0000-0001-7542-2417
Sara TaylorCell and Molecular Biology Department, Infectious Diseases Program, QIMR Berghofer Medical Research Institute, Brisbane, Queensland, Australia.
Simone L ReynoldsCell and Molecular Biology Department, Infectious Diseases Program, QIMR Berghofer Medical Research Institute, Brisbane, Queensland, Australia.ORCID 0000-0002-4902-2003
Ehtesham MofizBioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Melbourne, Victoria, Australia.ORCID 0000-0002-3269-5236
Shivashankar H NajarajFaculty of Health, School-Biomedical Sciences, Queensland University of Technology, Brisbane, Queensland, Australia.
Harsha GowdaCell and Molecular Biology Department, Infectious Diseases Program, QIMR Berghofer Medical Research Institute, Brisbane, Queensland, Australia.ORCID 0000-0002-4118-6855
Anil MadugunduInstitute of Bioinformatics, Bangalore, India.
Santosh RenuseInstitute of Bioinformatics, Bangalore, India.
Deborah HoltMenzies School of Health Research, Charles Darwin University, Darwin, Australia.ORCID 0000-0003-4951-1891
Akhilesh PandeyCenter for Individualized Medicine and Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, United States of America.
Anthony T PapenfussBioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Melbourne, Victoria, Australia.ORCID 0000-0002-1102-8506
Katja FischerCell and Molecular Biology Department, Infectious Diseases Program, QIMR Berghofer Medical Research Institute, Brisbane, Queensland, Australia.
The University of Melbourne · AUQIMR Berghofer Medical Research Institute · AUMayo Clinic · USWalter and Eliza Hall Institute of Medical Research · AUCharles Darwin University · AUInstitute of Bioinformatics · INQueensland University of Technology · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The parasitic mite Sarcoptes scabiei is an economically highly significant parasite of the skin of humans and animals worldwide. In humans, this mite causes a neglected tropical disease (NTD), called scabies. This disease results in major morbidity, disability, stigma and poverty globally and is often associated with secondary bacterial infections. Currently, anti-scabies treatments are not sufficiently effective, resistance to them is emerging and no vaccine is available. Here, we report the first high-quality genome and transcriptomic data for S. scabiei. The genome is 56.6 Mb in size, has a a repeat content of 10.6% and codes for 9,174 proteins. We explored key molecules involved in development, reproduction, host-parasite interactions, immunity and disease. The enhanced 'omic data sets for S. scabiei represent comprehensive and critical resources for genetic, functional genomic, metabolomic, phylogenetic, ecological and/or epidemiological investigations, and will underpin the design and development of new treatments, vaccines and/or diagnostic tests.

Indexed as

AnimalsGenome SizeHost-Parasite InteractionsMass SpectrometryPhylogenySarcoptes scabieiScabiesSkinSwine

Identifiers

PMID33001992
PMCPMC7591027
OpenAlexW3090264179

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.