Evidence map›Paper›PMID 33000540›Full record

ArticleNeurogastroenterology and motility2021

A simple automated approach to measure mouse whole gut transit.

Halil Kacmaz, Alecia Alto, Kaitlyn Knutson, David R Linden, Simon J Gibbons, Gianrico Farrugia, Arthur Beyder

Open access · greenAbstract read
In one paragraph

Article in Neurogastroenterology and motility, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. A noninvasiveAmerican journal of physiology. Endocrinology and metabolism · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Circadian rhythm and whole gut transit in mice.Neurogastroenterology and motility · 2024
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Halil KacmazEnteric Neuroscience Program (ENSP), Mayo Clinic, Rochester, MN, USA.
Alecia AltoEnteric Neuroscience Program (ENSP), Mayo Clinic, Rochester, MN, USA.
Kaitlyn KnutsonEnteric Neuroscience Program (ENSP), Mayo Clinic, Rochester, MN, USA.
David R LindenEnteric Neuroscience Program (ENSP), Mayo Clinic, Rochester, MN, USA.ORCID 0000-0002-1727-0387
Simon J GibbonsEnteric Neuroscience Program (ENSP), Mayo Clinic, Rochester, MN, USA.ORCID 0000-0001-5311-5993
Gianrico FarrugiaEnteric Neuroscience Program (ENSP), Mayo Clinic, Rochester, MN, USA.ORCID 0000-0003-3473-5235
Arthur BeyderEnteric Neuroscience Program (ENSP), Mayo Clinic, Rochester, MN, USA.ORCID 0000-0002-9225-4854
Mayo Clinic in Arizona · US

Funding

Physiological Characterization and Data Integration CoreP01DK068055 · NIDDK · MAYO CLINIC ROCHESTER · PI ORDOG, TAMAS · 2004 to 2019
$23.8M
MECHANOTRANSDUCTION IN INTESTINAL SMOOTH MUSCLE CELLSR01DK052766 · NIDDK · MAYO CLINIC ROCHESTER · PI BEYDER, ARTHUR, FARRUGIA, GIANRICO · 1997 to 2025
$8.3M
Mechanotransduction in gastrointestinal physiologyR01DK123549 · NIDDK · MAYO CLINIC ROCHESTER · PI Arthur Beyder · 2019 to 2026
$3.7M
Does the gut have a sense of touch?DP2AT010875 · NCCIH · MAYO CLINIC ROCHESTER · PI BEYDER, ARTHUR · 2019 to 2019
$2.4M
Enterochromaffin cell mechanotransduction and mechanosensitive serotonin release depend on calcium signaling downstream of Piezo2 activationR03DK119683 · NIDDK · MAYO CLINIC ROCHESTER · PI BEYDER, ARTHUR · 2019 to 2020
$159k
NCCIH NIH HHS DP2 AT010875NIDDK NIH HHS P01 DK068055NIDDK NIH HHS R01 DK052766NIDDK NIH HHS R01 DK123549NIDDK NIH HHS R03 DK119683
6 · The paper itself

Abstract

backgroundGastrointestinal (GI) motility is a complex physiological process that is critical for normal GI function. Disruption of GI motility frequently occurs in GI diseases or as side effects of therapeutics. Whole gut transit measurements, like carmine red leading-edge transit, in mice form the cornerstone of in vivo preclinical GI motility studies.

methodWe have developed an easily achievable, labor-saving method to measure whole gut transit time in mice. This approach uses inexpensive, commercially available materials to monitor pellet production over time via high definition cameras capturing time-lapse video for offline analysis. KEY

resultWe describe the assembly of our automated gut transit setup and validate this approach by comparing the results with loperamide to delay transit and conventional transit measurements. We demonstrate that compared to the control group, the loperamide group had slowed transit, evidenced by a decrease in total pellet production and prolonged whole gut transit time. The control group had an extended transit time compared with the results reported in the literature. Whole gut transit rates accelerated to times comparable to the literature by disrupting cages every 10-15 min to imitate the conventional approach, suggesting that disruption affects the assay and supports the use of an automated approach. CONCLUSION & INFERENCES: A novel automated, inexpensive, and easily assembled whole gut transit setup is labor-saving and allows minimal disruption to animal behavior compared with the conventional approach.

Indexed as

Gastrointestinal TransitAnimalsAutomation, LaboratoryFemaleMaleMiceMice, Inbred C57BLTime-Lapse Imaging

Identifiers

PMID33000540
PMCPMC7899194
OpenAlexW3091759697

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.