Evidence map›Paper›PMID 32998685›Full record

ArticleBMC genomics2020

Divergence of metabolites in three phylogenetically close Monascus species (M. pilosus, M. ruber, and M. purpureus) based on secondary metabolite biosynthetic gene clusters.

Yuki Higa, Young-Soo Kim, Md Altaf-Ul-Amin, Ming Huang, Naoaki Ono, Shigehiko Kanaya

Abstract read
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Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Unveiling Metabolic Capability and Growth Adaptation ofInternational journal of molecular sciences · 2026
    Article
  3. An ATMT-CRISPR/Cas9 system for genome editing in Monascus purpureus.World journal of microbiology & biotechnology · 2026
    Article
  4. Article
  5. Co-Culture ofJournal of fungi (Basel, Switzerland) · 2025
    Article
  6. Article
  7. Article
  8. Mechanism of puberulic acid contamination in red yeast rice tablets that caused a serious food poisoning outbreak in Japan.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2025
    Article
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  18. Review
  19. Effect of aFrontiers in microbiology · 2021
    Article
4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

6 authors.

Yuki HigaR&D Center, Kobayashi Pharmaceutical Co., Ltd, Ibaraki-shi, Toyokawa, 1-30-3, Osaka, Japan.
Young-Soo KimR&D Center, Kobayashi Pharmaceutical Co., Ltd, Ibaraki-shi, Toyokawa, 1-30-3, Osaka, Japan.
Md Altaf-Ul-AminGraduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma-shi, Takayama-cho, Nara, 8916-5, Japan.
Ming HuangGraduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma-shi, Takayama-cho, Nara, 8916-5, Japan.
Naoaki OnoGraduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma-shi, Takayama-cho, Nara, 8916-5, Japan. nono@is.naist.jp.ORCID http://orcid.org/0000-0002-7722-055X
Shigehiko KanayaGraduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma-shi, Takayama-cho, Nara, 8916-5, Japan.

Funding

Japan Society for the Promotion of Science (JP) 16K07223Japan Society for the Promotion of Science (JP) 17K00406National Bioscience Database Center (JP) 18am0101111
6 · The paper itself

Abstract

backgroundSpecies of the genus Monascus are considered to be economically important and have been widely used in the production of yellow and red food colorants. In particular, three Monascus species, namely, M. pilosus, M. purpureus, and M. ruber, are used for food fermentation in the cuisine of East Asian countries such as China, Japan, and Korea. These species have also been utilized in the production of various kinds of natural pigments. However, there is a paucity of information on the genomes and secondary metabolites of these strains. Here, we report the genomic analysis and secondary metabolites produced by M. pilosus NBRC4520, M. purpureus NBRC4478 and M. ruber NBRC4483, which are NBRC standard strains. We believe that this report will lead to a better understanding of red yeast rice food.

resultsWe examined the diversity of secondary metabolite production in three Monascus species (M. pilosus, M. purpureus, and M. ruber) at both the metabolome level by LCMS analysis and at the genome level. Specifically, M. pilosus NBRC4520, M. purpureus NBRC4478 and M. ruber NBRC4483 strains were used in this study. Illumina MiSeq 300 bp paired-end sequencing generated 17 million high-quality short reads in each species, corresponding to 200 times the genome size. We measured the pigments and their related metabolites using LCMS analysis. The colors in the liquid media corresponding to the pigments and their related metabolites produced by the three species were very different from each other. The gene clusters for secondary metabolite biosynthesis of the three Monascus species also diverged, confirming that M. pilosus and M. purpureus are chemotaxonomically different. M. ruber has similar biosynthetic and secondary metabolite gene clusters to M. pilosus. The comparison of secondary metabolites produced also revealed divergence in the three species.

conclusionsOur findings are important for improving the utilization of Monascus species in the food industry and industrial field. However, in view of food safety, we need to determine if the toxins produced by some Monascus strains exist in the genome or in the metabolome.

Indexed as

Genes, PlantGenetic SpeciationSecondary MetabolismMonascusMultigene FamilyPhylogenyPigments, BiologicalPigments, BiologicalCitrininComparative genomicsFermentationFood microbiologyMonacolin KMonascus speciesNatural pigmentPolyketide synthase

Identifiers

PMID32998685
PMCPMC7528236

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.