Evidence map›Paper›PMID 32998431›Full record

ArticleToxins2020

Indoxyl Sulfate-Mediated Metabolic Alteration of Transcriptome Signatures in Monocytes of Patients with End-Stage Renal Disease (ESRD).

Hee Young Kim, Su Jeong Lee, Yuri Hwang, Ga Hye Lee, Chae Eun Yoon, Hyeon Chang Kim, Tae-Hyun Yoo, Won-Woo Lee

Open access · goldAbstract read
In one paragraph

Article in Toxins, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Value of DUSP6 in peripheral blood mononuclear cells in predicting adverse cardiovascular events after peritoneal dialysis in diabetic nephropathy.Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Hee Young KimDepartment of Microbiology and Immunology, Seoul National University College of Medicine, Seoul 03080, Korea.
Su Jeong LeeLaboratory of Inflammation and Autoimmunity (LAI), Department of Biomedical Sciences and BK21Plus Biomedical Science Project, Seoul National University College of Medicine, Seoul 03080, Korea.
Yuri HwangDepartment of Microbiology and Immunology, Seoul National University College of Medicine, Seoul 03080, Korea.
Ga Hye LeeLaboratory of Inflammation and Autoimmunity (LAI), Department of Biomedical Sciences and BK21Plus Biomedical Science Project, Seoul National University College of Medicine, Seoul 03080, Korea.
Chae Eun YoonDepartment of Microbiology and Immunology, Seoul National University College of Medicine, Seoul 03080, Korea.
Hyeon Chang KimCardiovascular and Metabolic Diseases Etiology Research Center and Department of Preventive Medicine, Yonsei University College of Medicine, Seoul 03722, Korea.ORCID 0000-0001-7867-1240
Tae-Hyun YooDivision of Nephrology, Department of Internal Medicine, Yonsei University College of Medicine, Seoul 03722, Korea.
Won-Woo LeeDepartment of Microbiology and Immunology, Seoul National University College of Medicine, Seoul 03080, Korea.ORCID 0000-0002-5347-9591
Seoul National University · KRYonsei University · KR

Funding

Ministry of Health and Welfare HI13C0715National Research Foundation of Korea NRF-2018R1A2B2006310, NRF-2019R1H1A2101272Seoul National University Hospital No. 0320200260: 2020-1725
6 · The paper itself

Abstract

End-stage renal disease (ESRD) is the final stage of chronic kidney disease, which is increasingly prevalent worldwide and is associated with the progression of cardiovascular disease (CVD). Indoxyl sulfate (IS), a major uremic toxin, plays a key role in the pathology of CVD via adverse effects in endothelial and immune cells. Thus, there is a need for a transcriptomic overview of IS responsive genes in immune cells of ESRD patients. Here, we investigated IS-mediated alterations in gene expression in monocytes from ESRD patients. Transcriptomic analysis of ESRD patient-derived monocytes and IS-stimulated monocytes from healthy controls was performed, followed by analysis of differentially expressed genes (DEGs) and gene ontology (GO). We found that 148 upregulated and 139 downregulated genes were shared between ESRD patient-derived and IS-stimulated monocytes. Interaction network analysis using STRING and ClueGo suggests that mainly metabolic pathways, such as the pentose phosphate pathway, are modified by IS in ESRD patient-derived monocytes. These findings were confirmed in IS-stimulated monocytes by the increased mRNA expression of genes including G6PD, PGD, and TALDO1. Our data suggest that IS causes alteration of metabolic pathways in monocytes of ESRD patients and, thus, these altered genes may be therapeutic targets.

Indexed as

TranscriptomeAgedCase-Control StudiesEnergy MetabolismFemaleGene Expression ProfilingGene Regulatory NetworksHumansIndicanKidney Failure, ChronicMaleMiddle AgedMonocytesProtein Interaction MapsToxins, BiologicalUp-RegulationIndicanToxins, Biologicalaryl hydrocarbon receptorend-stage renal disease (ESRD)indoxyl sulfate (IS)metabolic pathwaymonocytestranscriptomic analysisuremic toxins

Identifiers

PMID32998431
PMCPMC7601745
OpenAlexW3089382756

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.